Ruminococcaceae bacterium R-25

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Description

Ruminococcaceae bacterium R-25 is characterized by having two replicons, which suggests a complex genomic structure potentially advantageous for its adaptability and function within its ecological niche. The organism is classified under the family Ruminococcaceae, known for its role in the fermentation of plant materials in the gut of herbivores. The genome of Ruminococcaceae bacterium R-25 is represented by two distinct accessions: QGFZ00000000.1 and UHJI00000000.1. These accessions provide a basis for understanding the genomic features and biological functions of the bacterium, although specific traits and functionalities associated with these sequences are not detailed in the provided data. Ruminococcaceae species are often associated with the degradation of complex carbohydrates, contributing to the digestion and fermentation processes in their hosts. This capability highlights the bacterium's potential role in nutrient cycling and its significance in the gut microbiome, particularly in herbivorous animals. Understanding the traits of Ruminococcaceae bacterium R-25 may offer insights into its ecological role in the digestive systems of herbivores, emphasizing the importance of microbial communities in nutrient assimilation and energy production from fibrous plant materials. The presence of multiple replicons may enhance its adaptability to fluctuating environmental conditions, further contributing to its ecological significance.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcaceae bacterium strain R-25 genome assembly, contig:

Gene Summary

Adenine Count

853217 bp

Thymine Count

838844 bp

Guanine Count

696180 bp

Cytosine Count

679320 bp

Genome Length

3067561 bp

Protein-coding Genes

2712 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSAMN06297423_0273Not AvailablePositive333585 - 33532465634.0
diguanylate cyclase (ggdef) domain-containing proteinSAMN06297423_0274Not AvailablePositive335414 - 33682053554.6
hypothetical proteinSAMN06297423_0275Not AvailableNegative336896 - 33805643343.1
Trna-alaNot AvailableNot AvailablePositive338314 - 338388Not Available
aldose 1-epimeraseSAMN06297423_0277Not AvailablePositive338469 - 33957839749.0
branched-chain amino acid aminotransferaseSAMN06297423_0278Not AvailablePositive339662 - 34069637771.3
lysophospholipase l1SAMN06297423_0279Not AvailableNegative340792 - 34155027794.0
diaminopimelate dehydrogenaseSAMN06297423_0280Not AvailableNegative341630 - 34261635803.4
sugar-transfer associated atp-graspSAMN06297423_0281Not AvailablePositive342617 - 34371742539.5
biotin transport system substrate-specific componentSAMN06297423_0282Not AvailablePositive343790 - 34439221591.7

Displaying genes 271 – 280 of 5520 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.