endosymbiont of Lamellibrachia luymesi

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Family

Genus

Description

Lamellibrachia luymesi, a species of deep-sea tube worm, is associated with a notable endosymbiont that plays a crucial role in its ecology. This endosymbiont possesses a single replicon, indicating a streamlined genomic structure that is likely adapted to the specific environmental conditions encountered by L. luymesi in the deep-sea hydrothermal vent ecosystems. The genetic information of this endosymbiont can be accessed through the sequence accession QFXD00000000.1, which provides a reference point for studying its genomic characteristics and functions. Understanding the genomic makeup of this endosymbiont is essential for elucidating its metabolic capabilities, particularly its potential for chemosynthesis, which is critical in the nutrient-poor environments of hydrothermal vents. The relationship between L. luymesi and its endosymbiont is symbiotic, where the endosymbiont likely provides essential nutrients, such as organic carbon, through chemosynthetic processes, while the host offers a protected environment and access to inorganic substrates. This interaction exemplifies how organisms in extreme environments can rely on mutualistic relationships for survival. In summary, the single replicon of the endosymbiont of Lamellibrachia luymesi, as documented under accession QFXD00000000.1, highlights its specialized adaptation to the deep-sea habitat, contributing to the overall success and resilience of the host species in a challenging ecological niche.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: endosymbiont of Lamellibrachia luymesi isolate A1422

Gene Summary

Adenine Count

810517 bp

Thymine Count

798641 bp

Guanine Count

951728 bp

Cytosine Count

965095 bp

Genome Length

3525981 bp

Protein-coding Genes

3541 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-alanine--d-alanine ligaseDIZ79_03220Not AvailablePositive605395 - 60656742626.1
[protein-pii] uridylyltransferaseDIZ79_03225Not AvailableNegative606597 - 609248101239.0
type i methionyl aminopeptidaseDIZ79_03230Not AvailableNegative609248 - 61002428585.6
30s ribosomal protein s2DIZ79_03235Not AvailablePositive610292 - 61103827589.3
elongation factor tsDIZ79_03240Not AvailablePositive611134 - 61201831652.7
ump kinaseDIZ79_03245Not AvailablePositive612177 - 61289925571.2
ribosome recycling factorDIZ79_03250Not AvailablePositive612901 - 61345820867.2
di-trans,poly-cis-decaprenylcistransferaseDIZ79_03255Not AvailablePositive613669 - 61443928435.7
phosphatidate cytidylyltransferaseDIZ79_03260Not AvailablePositive614447 - 61527129754.7
1-deoxy-d-xylulose-5-phosphate reductoisomeraseDIZ79_03265Not AvailablePositive615268 - 61643441741.4

Displaying genes 621 – 630 of 3601 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.