endosymbiont of Lamellibrachia luymesi

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Family

Genus

Description

Lamellibrachia luymesi, a species of deep-sea tube worm, is associated with a notable endosymbiont that plays a crucial role in its ecology. This endosymbiont possesses a single replicon, indicating a streamlined genomic structure that is likely adapted to the specific environmental conditions encountered by L. luymesi in the deep-sea hydrothermal vent ecosystems. The genetic information of this endosymbiont can be accessed through the sequence accession QFXD00000000.1, which provides a reference point for studying its genomic characteristics and functions. Understanding the genomic makeup of this endosymbiont is essential for elucidating its metabolic capabilities, particularly its potential for chemosynthesis, which is critical in the nutrient-poor environments of hydrothermal vents. The relationship between L. luymesi and its endosymbiont is symbiotic, where the endosymbiont likely provides essential nutrients, such as organic carbon, through chemosynthetic processes, while the host offers a protected environment and access to inorganic substrates. This interaction exemplifies how organisms in extreme environments can rely on mutualistic relationships for survival. In summary, the single replicon of the endosymbiont of Lamellibrachia luymesi, as documented under accession QFXD00000000.1, highlights its specialized adaptation to the deep-sea habitat, contributing to the overall success and resilience of the host species in a challenging ecological niche.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: endosymbiont of Lamellibrachia luymesi isolate A1422

Gene Summary

Adenine Count

810517 bp

Thymine Count

798641 bp

Guanine Count

951728 bp

Cytosine Count

965095 bp

Genome Length

3525981 bp

Protein-coding Genes

3541 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysogenization regulator hfldDIZ79_15805Not AvailableNegative2907638 - 290826123152.1
trna 2-thiouridine(34) synthase mnmaDIZ79_15810Not AvailableNegative2908258 - 290937641297.9
pseudouridine synthaseDIZ79_15815Not AvailableNegative2909373 - 290993921568.9
cold shock domain protein cspdDIZ79_15820Not AvailableNegative2910257 - 29104697789.14
atp-dependent clp protease adapter clpsDIZ79_15825Not AvailablePositive2910909 - 291122912280.8
atp-dependent clp protease atp-binding subunit clpaDIZ79_15830Not AvailablePositive2911245 - 291350083174.6
translation initiation factor if-1DIZ79_15835Not AvailableNegative2913540 - 29137588296.12
arginyltransferaseDIZ79_15840Not AvailableNegative2913914 - 291466629195.4
hypothetical proteinDIZ79_15845Not AvailableNegative2914659 - 291497611980.0
is3 family transposaseDIZ79_15850Not AvailablePositive2915008 - 29152358399.11

Displaying genes 3011 – 3020 of 3601 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.