Amycolatopsis echigonensis str. dsm 45165

aerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Amycolatopsis

Description

Amycolatopsis echigonensis strain DSM 45165 is a Gram-positive, aerobic bacterium that exhibits non-motility. This strain is characterized by the presence of flagella, which typically indicates potential for movement in certain contexts; however, as it is classified as non-motile, this might suggest that flagella are not utilized for locomotion in its natural habitat. The optimal growth temperature for A. echigonensis is 29°C, placing it within the mesophilic temperature range. This suggests that the bacterium thrives in moderate temperature environments, which is common for many soil-dwelling actinobacteria. The organism has a single replicon, indicating a simpler genomic structure that may facilitate efficient replication under optimal conditions. The accession number PJMY00000000.1 can be referenced for genetic and genomic information specific to this strain. The traits of A. echigonensis suggest that it may play a role in specific ecological niches where aerobic conditions and moderate temperatures prevail, potentially influencing soil health and nutrient cycling. Understanding the characteristics of A. echigonensis can contribute to insights into its ecological role, particularly how its mesophilic nature and aerobic metabolism may affect microbial community dynamics and interactions in its environment.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusAmycolatopsis
SpeciesAmycolatopsis echigonensis
Straindsm 45165

Profile

Physiology
Gram staining propertiesGram-positive
ShapeNot Available
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Amycolatopsis echigonensis strain DSM 45165 Ga0074778_13, whole

Gene Summary

Adenine Count

1417701 bp

Thymine Count

1420489 bp

Guanine Count

3248395 bp

Cytosine Count

3226378 bp

Genome Length

9312963 bp

Protein-coding Genes

8661 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
acyl-coa synthetase (amp-forming)/amp-acid ligase iiATK30_0016Not AvailablePositive16375 - 1872084144.0
s-(hydroxymethyl)glutathione dehydrogenase/alcohol dehydrogenaseATK30_0017Not AvailablePositive18745 - 1984238304.1
acyl-coa reductase-like nad-dependent aldehyde dehydrogenaseATK30_0018Not AvailablePositive19864 - 2132750718.9
gntr family transcriptional regulatorATK30_0019Not AvailableNegative21350 - 2210827515.7
5-dehydro-2-deoxygluconokinaseATK30_0020Not AvailablePositive22229 - 2317633715.9
hypothetical proteinATK30_0021Not AvailablePositive23173 - 2405430910.3
5-deoxyglucuronate isomeraseATK30_0022Not AvailablePositive24051 - 2489030205.2
3d-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolaseATK30_0023Not AvailablePositive24887 - 2675266744.1
malonate-semialdehyde dehydrogenase (acetylating)/methylmalonate-semialdehyde dehydrogenaseATK30_0024Not AvailablePositive26764 - 2825752360.9
doxx-like proteinATK30_0025Not AvailableNegative28304 - 2867212717.1

Displaying genes 51 – 60 of 8762 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.