Burkholderia sp. Bp9004

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Burkholderia

Description

Burkholderia sp. Bp9004 is characterized by having a single replicon, which is a notable trait among bacteria as it can influence the organism's genomic stability and replication processes. The genome of Burkholderia sp. Bp9004 is accessible under the accession number QTQD00000000.1, providing a reference for further genomic studies. This taxon belongs to the Burkholderia genus, which is known for its diverse metabolic capabilities and ecological roles. Members of this genus are often found in various environments, including soil and water, and can be associated with both beneficial and pathogenic interactions with plants and animals. The ecological significance of Burkholderia sp. Bp9004 may contribute to its adaptability in various niches, potentially involving interactions with other microorganisms or the surrounding biotic and abiotic factors. Understanding the specific traits of Burkholderia sp. Bp9004, particularly its single replicon structure, is crucial for insights into its genomic organization and evolutionary strategies. The study of this bacterium may reveal important ecological roles in nutrient cycling, pathogen control, or plant growth promotion, reflecting the broader ecological implications of the Burkholderia genus as a whole.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia sp. Bp9004
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Burkholderia sp. Bp9004

Gene Summary

Adenine Count

1256541 bp

Thymine Count

1261013 bp

Guanine Count

2478934 bp

Cytosine Count

2448955 bp

Genome Length

7445443 bp

Protein-coding Genes

6622 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gmc family oxidoreductaseDIE08_27590Not AvailablePositive5847544 - 584932265091.0
cytochrome cDIE08_27595Not AvailablePositive5849349 - 585066546497.2
hamp domain-containing proteinDIE08_27600Not AvailablePositive5850698 - 585230257308.1
asp-trna(asn)/glu-trna(gln) amidotransferase gatcab subunit cDIE08_27605Not AvailableNegative5852426 - 585467282300.3
carboxymuconolactone decarboxylase family proteinDIE08_27610Not AvailableNegative5854767 - 585511112123.5
mandelate racemase/muconate lactonizing enzyme family proteinDIE08_27615Not AvailablePositive5855687 - 585688043470.4
d-2-hydroxyacid dehydrogenaseDIE08_27620Not AvailablePositive5856859 - 585788436411.3
transporterDIE08_27625Not AvailablePositive5858554 - 585985246990.2
hypothetical proteinDIE08_27630Not AvailablePositive5860583 - 586149733299.6
pyridoxal phosphate-dependent aminotransferaseDIE08_27635Not AvailableNegative5861687 - 586293746763.0

Displaying genes 5321 – 5330 of 6723 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

6 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00030584-CDP-2-C-methyl-D-erythritol 2-phosphateC14H22N3O17P3Chemical structure of 4-CDP-2-C-methyl-D-erythritol 2-phosphateNot available
Average597.257Da
Monoisotopic597.0184016Da
BASm0003091GDP-4-dehydro-alpha-D-rhamnoseC16H21N5O15P2Chemical structure of GDP-4-dehydro-alpha-D-rhamnoseNot available
Average585.313Da
Monoisotopic585.052036152Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00034972-C-methyl-D-erythritol 2,4-cyclic diphosphateC5H10O9P2Chemical structure of 2-C-methyl-D-erythritol 2,4-cyclic diphosphate143488-44-2
Average276.075Da
Monoisotopic275.9800049Da
BASm0003686(2E,6E,10E)-geranylgeranyl diphosphateC20H33O7P2Chemical structure of (2E,6E,10E)-geranylgeranyl diphosphateNot available
Average447.426Da
Monoisotopic447.171798138Da

Displaying 1–6 of 6 metabolites

Health Effects

No health effects information available for this bacterium.