Candidatus Nitrotoga sp. SPKER

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Nitrosomonadales

Family

Gallionellaceae

Genus

Candidatus Nitrotoga

Description

Candidatus Nitrotoga sp. SPKER is a notable member of the microbial community, characterized by its unique genomic structure. It possesses a single replicon, which is a significant trait that contributes to its genomic stability and adaptability within its ecological niche. The complete genome of this organism is cataloged under the accession number QFXG00000000.1, providing a reference for further studies and analyses. This organism is part of a larger group of bacteria known for their involvement in nitrogen cycling, particularly in environments where ammonia oxidation occurs. While specific metabolic pathways and ecological interactions of Candidatus Nitrotoga sp. SPKER are not detailed in the provided data, its classification suggests a potential role in the biogeochemical processes related to nitrogen transformation. The presence of Candidatus Nitrotoga sp. SPKER in microbial communities could indicate a complex interplay with other microorganisms, contributing to nitrogen availability in its habitat. This is particularly important in ecosystems where nitrogen is a limiting nutrient, as it plays a crucial role in plant growth and overall ecosystem health. Understanding the characteristics and ecological functions of Candidatus Nitrotoga sp. SPKER may provide insights into nitrogen cycling dynamics and the impact of microbial communities on environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderNitrosomonadales
FamilyGallionellaceae
GenusCandidatus Nitrotoga
SpeciesCandidatus Nitrotoga sp. SPKER
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Candidatus Nitrotoga sp. SPKER SPKER_NXR_Contig, whole genome

Gene Summary

Adenine Count

790142 bp

Thymine Count

776374 bp

Guanine Count

699556 bp

Cytosine Count

716185 bp

Genome Length

2982257 bp

Protein-coding Genes

2792 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptidyl-prolyl cis-trans isomerase dDID92_2727743549Not AvailableNegative639159 - 64104871060.1
Trna-aspNot AvailableNot AvailablePositive641115 - 641191Not Available
Trna-valNot AvailableNot AvailablePositive641206 - 641281Not Available
atp-dependent proteinase serine peptidase merops family s16DID92_2727743552Not AvailableNegative641383 - 64379488943.5
atp-dependent clp protease atp-binding subunit clpxDID92_2727743553Not AvailableNegative643919 - 64517545922.6
atp-dependent clp protease proteolytic subunit clppDID92_2727743554Not AvailableNegative645238 - 64586423156.0
trigger factorDID92_2727743555Not AvailableNegative645864 - 64717449104.8
Trna-leuNot AvailableNot AvailablePositive647212 - 647296Not Available
hypothetical proteinDID92_2727743557Not AvailablePositive647391 - 6475074644.65
dihydrolipoamide dehydrogenaseDID92_2727743558Not AvailableNegative647475 - 64889650043.7

Displaying genes 631 – 640 of 2856 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.