Abyssibacter profundi str. OUC007

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Chromatiales

Family

Oceanococcaceae

Genus

Abyssibacter

Description

Abyssibacter profundi str. OUC007 is characterized by having a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in deep-sea environments. The organism is cataloged under the accession number QEQK00000000.1, which serves as a unique identifier for genomic data related to this strain. The presence of a single replicon suggests that Abyssibacter profundi str. OUC007 may possess efficient replication mechanisms, potentially advantageous for survival in extreme conditions often found in deep-sea ecosystems. Such adaptations could play a significant role in its ecological niche, allowing it to thrive in environments with high pressure, low temperatures, and limited nutrient availability. The genomic organization of Abyssibacter profundi str. OUC007 may also reflect evolutionary strategies that optimize energy usage and resource acquisition in its habitat. Understanding the genomic traits of this strain can offer insights into the metabolic pathways it might employ, which could be essential for biogeochemical processes in the deep ocean. Further research into its metabolic capabilities could illuminate the role of Abyssibacter profundi str. OUC007 in the microbial communities of abyssal zones, contributing to our knowledge of microbial life in extreme environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderChromatiales
FamilyOceanococcaceae
GenusAbyssibacter
SpeciesAbyssibacter profundi
StrainOUC007

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Abyssibacter profundi strain OUC007 scaffold_54, whole genome

Gene Summary

Adenine Count

689701 bp

Thymine Count

689008 bp

Guanine Count

1184685 bp

Cytosine Count

1177969 bp

Genome Length

3741513 bp

Protein-coding Genes

3309 genes

Non-Coding Genes

83 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
is30 family transposaseDEH80_17035Not AvailablePositive3733943 - 373449020836.8
is3 family transposaseDEH80_17040Not AvailableNegative3734491 - 373501220477.6
is3 family transposaseDEH80_17045Not AvailablePositive3735013 - 373553420505.8
is110 family transposaseDEH80_17050Not AvailableNegative3736236 - 37364266687.81
hypothetical proteinDEH80_17055Not AvailableNegative3736473 - 373685614271.5
is30 family transposaseDEH80_17060Not AvailableNegative3737282 - 373765514382.0
nad(p)h-quinone oxidoreductase subunit 2DEH80_17065Not AvailablePositive3738159 - 373852012230.8
hypothetical proteinDEH80_17070Not AvailableNegative3738940 - 373930213716.2
is30 family transposaseDEH80_17075Not AvailablePositive3739704 - 374007414333.0
is256 family transposaseDEH80_17080Not AvailablePositive3740169 - 374044210597.7

Displaying genes 3381 – 3390 of 3392 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

315 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 315 metabolites

Health Effects

No health effects information available for this bacterium.