Sphingomonas pokkalii str. L3B27

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas pokkalii strain L3B27 is a rod-shaped bacterium that possesses flagella, enabling it to exhibit motility. The presence of a single replicon suggests a streamlined genomic organization, which may influence its adaptability and survival in various environments. The genomic information for this strain can be accessed under the accession number QENQ00000000.1. As a member of the Sphingomonas genus, this bacterium is likely involved in diverse ecological roles, particularly in the degradation of complex organic compounds. Sphingomonas species are known for their ability to thrive in environments that are rich in pollutants, making them significant in bioremediation processes. The motile nature of Sphingomonas pokkalii str. L3B27, combined with its single replicon, may enhance its capacity to colonize and persist in such challenging habitats. In summary, Sphingomonas pokkalii str. L3B27 exhibits traits that contribute to its ecological versatility and potential applications in environmental microbiology, particularly in the context of bioremediation. Its rod shape and flagella presence facilitate movement, while its genomic simplicity may provide advantages in adapting to various ecological niches.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas pokkalii
StrainL3B27

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas pokkalii str. L3B27
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas pokkalii strain L3B27 Scaffold_18, whole genome

Gene Summary

Adenine Count

708343 bp

Thymine Count

718639 bp

Guanine Count

1409766 bp

Cytosine Count

1385754 bp

Genome Length

4223965 bp

Protein-coding Genes

3739 genes

Non-Coding Genes

91 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDD559_04960Not AvailableNegative1085251 - 108557110757.3
energy transducer tonbDD559_04965Not AvailablePositive1085665 - 108639924590.0
4a-hydroxytetrahydrobiopterin dehydrataseDD559_04970Not AvailableNegative1086458 - 108675110827.8
neutral zinc metallopeptidaseDD559_04975Not AvailablePositive1086750 - 108720516435.4
heme abc exporter atp-binding protein ccmaDD559_04980Not AvailablePositive1087085 - 108777123545.7
heme abc transporter permease ccmbDD559_04985Not AvailablePositive1087768 - 108840320999.8
trna (guanosine(46)-n7)-methyltransferase trmbDD559_04990Not AvailableNegative1088484 - 108916425876.1
diguanylate phosphodiesteraseDD559_04995Not AvailableNegative1089214 - 108996026489.5
eal domain-containing proteinDD559_05000Not AvailableNegative1090121 - 109088227718.8
udp-n-acetylglucosamine 1-carboxyvinyltransferaseDD559_05005Not AvailableNegative1090968 - 109225144910.4

Displaying genes 1021 – 1030 of 3830 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.