Kingdom
Pseudomonadati
Phylum
Thermodesulfobacteriota
Class
Desulfovibrionia
Order
Desulfovibrionales
Family
Desulfovibrionaceae
Genus
Pseudodesulfovibrio
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Thermodesulfobacteriota |
| Class | Desulfovibrionia |
| Order | Desulfovibrionales |
| Family | Desulfovibrionaceae |
| Genus | Pseudodesulfovibrio |
| Species | Pseudodesulfovibrio hydrargyri |
| Strain | BerOc1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | curved/spiral |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
737881 bp
Thymine Count
739754 bp
Guanine Count
1301445 bp
Cytosine Count
1302029 bp
Genome Length
4081579 bp
Protein-coding Genes
3668 genes
Non-Coding Genes
79 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pd-(d/e)xk nuclease superfamily protein | BerOc1_03473 | Not Available | Negative | 3788783 - 3791710 | 108566.0 |
| atp-dependent helicase/nuclease subunit a | BerOc1_03474 | Not Available | Negative | 3791711 - 3794860 | 117958.0 |
| putative inner membrane transporter yicl | BerOc1_03475 | Not Available | Negative | 3794863 - 3795747 | 31840.9 |
| l-lysine cyclodeaminase | BerOc1_03476 | Not Available | Negative | 3795750 - 3796736 | 35366.8 |
| ribosomal large subunit pseudouridine synthase c | BerOc1_03477 | Not Available | Positive | 3796855 - 3797682 | 29724.8 |
| bacterial extracellular solute-binding protein, family 3 | BerOc1_03478 | Not Available | Negative | 3797705 - 3798478 | 29221.1 |
| 30s ribosomal protein s1 | BerOc1_03479 | Not Available | Negative | 3798599 - 3800059 | 52617.5 |
| signal recognition particle receptor ftsy | BerOc1_03480 | Not Available | Negative | 3800086 - 3801480 | 51038.0 |
| asparagine--trna ligase | BerOc1_03481 | Not Available | Positive | 3801634 - 3803001 | 51827.2 |
| putative allantoin permease | BerOc1_03482 | Not Available | Positive | 3804069 - 3805406 | 48618.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
