Pseudodesulfovibrio hydrargyri str. BerOc1

curved/spiral

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Pseudodesulfovibrio

Description

Pseudodesulfovibrio hydrargyri str. BerOc1 is a Gram-negative, curved to spiral-shaped bacterium. This organism is notable for possessing a single replicon, which is a characteristic that can influence its replication and genetic stability. The strain is classified under the genus Pseudodesulfovibrio, which suggests a role in the sulfur cycle, particularly in environments where sulfate-reducing bacteria are prevalent. The genomic information for Pseudodesulfovibrio hydrargyri str. BerOc1 can be accessed through the accession number LKAQ00000000.1. This data provides insights into its genetic makeup, potentially revealing pathways and mechanisms that are important for its survival and metabolic processes. Ecologically, the traits of Pseudodesulfovibrio hydrargyri str. BerOc1 suggest it may play a significant role in biogeochemical cycles, particularly in the degradation of organic matter in anaerobic environments. Its curved/spiral morphology may enhance its motility and adaptability in complex microbial communities. Understanding this organism's physiology and ecology can contribute to broader insights into microbial interactions in diverse environments, especially those impacted by mercury, as indicated by its name "hydrargyri," which refers to mercury in Latin. Overall, Pseudodesulfovibrio hydrargyri str. BerOc1 exemplifies the intricate relationships between microbial life and the biogeochemical processes that shape ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusPseudodesulfovibrio
SpeciesPseudodesulfovibrio hydrargyri
StrainBerOc1

Profile

Physiology
Gram staining propertiesGram-negative
Shapecurved/spiral
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudodesulfovibrio hydrargyri strain BerOc1 BerOc1_contig000005,

Gene Summary

Adenine Count

737881 bp

Thymine Count

739754 bp

Guanine Count

1301445 bp

Cytosine Count

1302029 bp

Genome Length

4081579 bp

Protein-coding Genes

3668 genes

Non-Coding Genes

79 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative diguanylate cyclase ycdtBerOc1_01424Not AvailablePositive1549341 - 155006027469.4
hypothetical proteinBerOc1_01425Not AvailableNegative1550075 - 155047014689.6
endonuclease/exonuclease/phosphatase family proteinBerOc1_01426Not AvailableNegative1550535 - 155154536485.6
cobalt-precorrin-4 c(11)-methyltransferaseBerOc1_01427Not AvailableNegative1551642 - 155240326480.9
exodeoxyribonuclease 10BerOc1_01428Not AvailableNegative1552403 - 155293919808.7
phosphoribosylglycinamide formyltransferaseBerOc1_01429Not AvailableNegative1553235 - 155393925351.7
bacterial extracellular solute-binding protein, family 3BerOc1_01430Not AvailablePositive1554116 - 155485627742.1
hypothetical proteinBerOc1_01431Not AvailablePositive1555014 - 155534311731.9
uroporphyrinogen-iii c-methyltransferaseBerOc1_01432Not AvailableNegative1555419 - 155693354518.4
valine--trna ligaseBerOc1_01433Not AvailableNegative1557075 - 1559741100717.0

Displaying genes 1451 – 1460 of 3747 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.