Pseudoclavibacter sp. RFBG4

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Pseudoclavibacter

Description

Pseudoclavibacter sp. RFBG4 is characterized by having a single replicon, indicating a streamlined genomic architecture that may contribute to its adaptability and functional efficiency. The genomic data for this organism is cataloged under the accession number PSYC00000000.1, which serves as a reference for researchers studying its genetic makeup and potential applications. The presence of a single replicon can suggest a stable genetic structure, which may provide advantages in specific environments, such as reduced genetic load and simplified regulation of gene expression. This trait is often observed in some microbial species that thrive in particular ecological niches, allowing them to maintain essential functions without the complexities associated with multiple replicons. In terms of ecological insight, the streamlined genome of Pseudoclavibacter sp. RFBG4 may facilitate its survival in environments with limited resources or specific challenges. The organism's genetic simplicity could enable quick adaptation to changing conditions, enhancing its ecological resilience. Such traits are crucial for microorganisms that inhabit diverse and often fluctuating environments, where competition and resource availability can impact survival and proliferation.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusPseudoclavibacter
SpeciesPseudoclavibacter sp. RFBG4
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoclavibacter sp. RFBG4 RFBG4_704, whole genome shotgun

Gene Summary

Adenine Count

635454 bp

Thymine Count

640454 bp

Guanine Count

1381739 bp

Cytosine Count

1376795 bp

Genome Length

4034452 bp

Protein-coding Genes

3611 genes

Non-Coding Genes

83 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
f420-dependent methylene-tetrahydromethanopterin reductaseC5E10_15645Not AvailableNegative3398670 - 340001348738.9
nitrilotriacetate monooxygenaseC5E10_15650Not AvailableNegative3400032 - 340121942114.7
hypothetical proteinC5E10_15655Not AvailablePositive3401333 - 340174014554.3
hypothetical proteinC5E10_15660Not AvailableNegative3401749 - 340310447120.4
16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferaseC5E10_15665Not AvailableNegative3403262 - 340411330381.6
deoxyribonucleaseC5E10_15670Not AvailableNegative3404110 - 340505133773.7
methionine--trna ligaseC5E10_15675Not AvailableNegative3405117 - 340668558672.5
16s rrna (cytidine(1402)-2'-o)-methyltransferaseC5E10_15680Not AvailableNegative3406755 - 340756728771.7
phospholipid carrier-dependent glycosyltransferaseC5E10_15685Not AvailablePositive3407705 - 340939662654.4
acetyl-coa c-acyltransferaseC5E10_15690Not AvailableNegative3409545 - 341075941525.6

Displaying genes 3111 – 3120 of 3694 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.