Candidatus Tokpelaia sp. JSC188

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Genus

Candidatus Tokpelaia

Description

Candidatus Tokpelaia sp. JSC188 is characterized by having a single replicon, which is indicative of its genomic structure. This trait may suggest a streamlined genome organization that can be advantageous for certain metabolic processes and cellular functions. The organism is cataloged under the accession number QENB00000000.1, which serves as a reference for genetic and genomic studies. The single replicon may imply that Candidatus Tokpelaia sp. JSC188 has adapted to a specific ecological niche, potentially influencing its survival and proliferation in its natural habitat. This trait can affect its genetic stability and capacity for horizontal gene transfer, which are important factors in microbial evolution and adaptation. Understanding the genomic structure of Candidatus Tokpelaia sp. JSC188 can provide insights into its ecological role and potential interactions with other microorganisms within its environment. The streamlined genomic architecture may also reflect a specialization that allows this organism to thrive under particular conditions, possibly impacting nutrient cycling or other ecological functions in its ecosystem. Such insights underscore the importance of studying microbial genomes to elucidate their roles in broader biological and ecological contexts.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Candidatus Tokpelaia sp. JSC188 JSC188_contig_9, whole genome

Gene Summary

Adenine Count

388444 bp

Thymine Count

391353 bp

Guanine Count

261305 bp

Cytosine Count

257878 bp

Genome Length

1298980 bp

Protein-coding Genes

1066 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amidohydrolaseJSC188_000691Not AvailablePositive826838 - 82805245532.6
soluble lytic murein transglycosylaseJSC188_000692Not AvailableNegative828469 - 83052077690.1
4-hydroxy-tetrahydrodipicolinate synthaseJSC188_000693Not AvailablePositive830773 - 83166331701.7
ssra-binding proteinJSC188_000694Not AvailablePositive831676 - 83215218868.0
nyn domain-containing proteinJSC188_000695Not AvailableNegative832315 - 83289322006.1
dna-directed rna polymerase subunit omegaJSC188_000696Not AvailablePositive833100 - 83351315335.2
guanosine polyphosphate pyrophosphohydrolaseJSC188_000697Not AvailablePositive833628 - 83588685535.1
orotate phosphoribosyltransferaseJSC188_000698Not AvailablePositive835899 - 83648021369.2
oxygen-independent coproporphyrinogen iii oxidaseJSC188_000699Not AvailablePositive836664 - 83803151669.8
major facilitator superfamily proteinJSC188_000700Not AvailableNegative838081 - 83929843881.9

Displaying genes 691 – 700 of 1110 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.