Pseudomonas sp. DTU12.3

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. DTU12.3 is characterized by possessing a single replicon, which indicates a streamlined genomic structure that may contribute to its adaptability in various environments. The genome of this bacterial strain is documented under the accession number NZ_CP027218.1, providing a reference point for further genomic analysis and comparisons within the Pseudomonas genus. Pseudomonas species are known for their metabolic versatility and ability to thrive in diverse ecological niches, including soil, water, and plant environments. This adaptability is often linked to their capacity to utilize a wide range of organic compounds as carbon and energy sources, which may be a significant trait of Pseudomonas sp. DTU12.3 as well. Given its classification within the Pseudomonas genus, Pseudomonas sp. DTU12.3 may play a role in biogeochemical cycles, such as nitrogen fixation or the degradation of pollutants, although specific functional traits were not provided in the current context. The presence of a single replicon may also suggest a certain evolutionary efficiency, potentially allowing for rapid responses to environmental changes. Understanding the genomic characteristics of Pseudomonas sp. DTU12.3 can provide insights into its ecological roles and potential applications in biotechnology, particularly in bioremediation or agricultural settings. Further research into its metabolic capabilities and interactions within its ecosystem could elucidate its significance in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. DTU12.3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. DTU12.3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. DTU12.3 chromosome, complete genome.

Gene Summary

Adenine Count

1275503 bp

Thymine Count

1265963 bp

Guanine Count

1859052 bp

Cytosine Count

1867951 bp

Genome Length

6268469 bp

Protein-coding Genes

5487 genes

Non-Coding Genes

138 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pa3611 family quorum-sensing-regulated virulence factorC2E19_RS07480Not AvailableNegative1653383 - 165380815230.3
dna helicase repC2E19_RS00005Not AvailablePositive1 - 201076602.7
xanthine phosphoribosyltransferaseC2E19_RS00010Not AvailablePositive2068 - 264020346.8
acetyl-coa hydrolase/transferase c-terminal domain-containing proteinC2E19_RS00020Not AvailableNegative2772 - 469471029.1
c-type cytochromeC2E19_RS00025Not AvailableNegative5027 - 544313865.7
cupin domain-containing proteinC2E19_RS00030Not AvailableNegative5626 - 617420055.2
alanine racemaseC2E19_RS00035Not AvailableNegative6263 - 733638951.2
rida family proteinC2E19_RS00040Not AvailableNegative7431 - 778412772.3
d-amino acid dehydrogenaseC2E19_RS00045Not AvailableNegative7756 - 906047135.9
lrp/asnc ligand binding domain-containing proteinC2E19_RS00050Not AvailablePositive9217 - 970518659.8

Displaying genes 51 – 60 of 5625 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.