Pseudomonas sp. DTU12.3

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. DTU12.3 is characterized by possessing a single replicon, which indicates a streamlined genomic structure that may contribute to its adaptability in various environments. The genome of this bacterial strain is documented under the accession number NZ_CP027218.1, providing a reference point for further genomic analysis and comparisons within the Pseudomonas genus. Pseudomonas species are known for their metabolic versatility and ability to thrive in diverse ecological niches, including soil, water, and plant environments. This adaptability is often linked to their capacity to utilize a wide range of organic compounds as carbon and energy sources, which may be a significant trait of Pseudomonas sp. DTU12.3 as well. Given its classification within the Pseudomonas genus, Pseudomonas sp. DTU12.3 may play a role in biogeochemical cycles, such as nitrogen fixation or the degradation of pollutants, although specific functional traits were not provided in the current context. The presence of a single replicon may also suggest a certain evolutionary efficiency, potentially allowing for rapid responses to environmental changes. Understanding the genomic characteristics of Pseudomonas sp. DTU12.3 can provide insights into its ecological roles and potential applications in biotechnology, particularly in bioremediation or agricultural settings. Further research into its metabolic capabilities and interactions within its ecosystem could elucidate its significance in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. DTU12.3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. DTU12.3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. DTU12.3 chromosome, complete genome.

Gene Summary

Adenine Count

1275503 bp

Thymine Count

1265963 bp

Guanine Count

1859052 bp

Cytosine Count

1867951 bp

Genome Length

6268469 bp

Protein-coding Genes

5487 genes

Non-Coding Genes

138 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysozyme inhibitor lpri family proteinC2E19_RS27380Not AvailablePositive5942980 - 594338114522.8
type ii toxin-antitoxin system rele family toxinC2E19_RS27385Not AvailablePositive5943594 - 59438489782.85
helix-turn-helix domain-containing proteinC2E19_RS27390Not AvailablePositive5943832 - 594415511883.3
duf3010 family proteinC2E19_RS27395Not AvailablePositive5944185 - 594460114843.0
glxa family transcriptional regulatorC2E19_RS27400Not AvailableNegative5944739 - 594568335483.9
choline abc transporter substrate-binding proteinC2E19_RS27405Not AvailablePositive5945891 - 594683534318.3
3-keto-5-aminohexanoate cleavage proteinC2E19_RS27410Not AvailablePositive5946957 - 594784431369.1
l-carnitine dehydrogenaseC2E19_RS27415Not AvailablePositive5948001 - 594896634783.6
thioesterase family proteinC2E19_RS27420Not AvailablePositive5949421 - 594989717991.4
gamma-butyrobetaine dioxygenaseC2E19_RS27425Not AvailablePositive5949922 - 595108544087.3

Displaying genes 5321 – 5330 of 5625 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.