Pseudomonas sp. DTU12.3

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. DTU12.3 is characterized by possessing a single replicon, which indicates a streamlined genomic structure that may contribute to its adaptability in various environments. The genome of this bacterial strain is documented under the accession number NZ_CP027218.1, providing a reference point for further genomic analysis and comparisons within the Pseudomonas genus. Pseudomonas species are known for their metabolic versatility and ability to thrive in diverse ecological niches, including soil, water, and plant environments. This adaptability is often linked to their capacity to utilize a wide range of organic compounds as carbon and energy sources, which may be a significant trait of Pseudomonas sp. DTU12.3 as well. Given its classification within the Pseudomonas genus, Pseudomonas sp. DTU12.3 may play a role in biogeochemical cycles, such as nitrogen fixation or the degradation of pollutants, although specific functional traits were not provided in the current context. The presence of a single replicon may also suggest a certain evolutionary efficiency, potentially allowing for rapid responses to environmental changes. Understanding the genomic characteristics of Pseudomonas sp. DTU12.3 can provide insights into its ecological roles and potential applications in biotechnology, particularly in bioremediation or agricultural settings. Further research into its metabolic capabilities and interactions within its ecosystem could elucidate its significance in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. DTU12.3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. DTU12.3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. DTU12.3 chromosome, complete genome.

Gene Summary

Adenine Count

1275503 bp

Thymine Count

1265963 bp

Guanine Count

1859052 bp

Cytosine Count

1867951 bp

Genome Length

6268469 bp

Protein-coding Genes

5487 genes

Non-Coding Genes

138 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional biotin--[acetyl-coa-carboxylase] ligase/biotin operon repressor biraC2E19_RS26695Not AvailableNegative5785807 - 578676034704.8
5s ribosomal rnaNot AvailableNot AvailablePositive5786893 - 5787008Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive5787177 - 5790070Not Available
Trna-alaNot AvailableNot AvailablePositive5790318 - 5790393Not Available
Trna-ileNot AvailableNot AvailablePositive5790424 - 5790500Not Available
16s ribosomal rnaNot AvailableNot AvailablePositive5790582 - 5792118Not Available
tyrosine--trna ligaseC2E19_RS26730Not AvailableNegative5792615 - 579381444151.2
peptidoglycan dd-metalloendopeptidase family proteinC2E19_RS26740Not AvailablePositive5794028 - 579545250893.5
anhydro-n-acetylmuramic acid kinaseC2E19_RS26745Not AvailablePositive5795456 - 579654738743.6
iron-sulfur cluster insertion protein erpaC2E19_RS26750Not AvailableNegative5796621 - 579697112506.5

Displaying genes 5191 – 5200 of 5625 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.