Variovorax sp. RO1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. RO1 is a rod-shaped bacterium characterized by having a single replicon. This organism is part of the genus Variovorax, which is known for its metabolic versatility, enabling it to thrive in various environments. The accession number for Variovorax sp. RO1 is PKMT00000000.1, which provides a reference for genetic and genomic studies related to this strain. As a member of the Variovorax genus, Variovorax sp. RO1 may possess capabilities that allow it to degrade a range of organic compounds, contributing to bioremediation processes. The ability to utilize diverse substrates can make this bacterium significant in ecological contexts, particularly in environments impacted by pollution or organic waste. Understanding the traits of Variovorax sp. RO1, including its rod shape and genetic structure, provides insights into its potential applications in environmental microbiology. The metabolic capabilities associated with the Variovorax genus suggest that strains like RO1 could play a role in nutrient cycling and the breakdown of complex organic materials in various ecosystems. Overall, the study of Variovorax sp. RO1 can enhance our understanding of microbial diversity and its ecological implications in bioremediation and environmental sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. RO1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. RO1 scaffold_15, whole genome shotgun sequence.

Gene Summary

Adenine Count

1118858 bp

Thymine Count

1123229 bp

Guanine Count

2321917 bp

Cytosine Count

2307160 bp

Genome Length

6871199 bp

Protein-coding Genes

6263 genes

Non-Coding Genes

91 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tripartite tricarboxylate transporter substrate binding proteinCY658_01910Not AvailableNegative422479 - 42347735463.1
acyl-coa synthetaseCY658_01915Not AvailableNegative423531 - 42548368406.9
abc transporter substrate-binding proteinCY658_01920Not AvailableNegative425539 - 42653735095.6
coa transferaseCY658_01925Not AvailableNegative426582 - 42779043278.1
enoyl-coa hydrataseCY658_01930Not AvailableNegative427853 - 42866828500.2
pimeloyl-coa dehydrogenase small subunitCY658_01935Not AvailableNegative428665 - 42980740167.9
pimeloyl-coa dehydrogenase large subunitCY658_01940Not AvailableNegative429820 - 43102844220.9
acetyl-coa c-acyltransferaseCY658_01945Not AvailableNegative431047 - 43223742009.5
3-hydroxyacyl-coa dehydrogenaseCY658_01950Not AvailableNegative432270 - 43440575627.3
lysr family transcriptional regulatorCY658_01955Not AvailablePositive434561 - 43547534210.6

Displaying genes 441 – 450 of 6354 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.