Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. RO1 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1118858 bp
Thymine Count
1123229 bp
Guanine Count
2321917 bp
Cytosine Count
2307160 bp
Genome Length
6871199 bp
Protein-coding Genes
6263 genes
Non-Coding Genes
91 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s-adenosylhomocysteine deaminase | CY658_01355 | Not Available | Positive | 307857 - 309269 | 50264.1 |
| permease | CY658_01360 | Not Available | Positive | 309266 - 309979 | 24596.1 |
| gnat family n-acetyltransferase | CY658_01365 | Not Available | Negative | 309971 - 310564 | 21698.9 |
| zinc-binding alcohol dehydrogenase family protein | CY658_01370 | Not Available | Negative | 310584 - 311594 | 35623.2 |
| lysr family transcriptional regulator | CY658_01375 | Not Available | Positive | 311683 - 312591 | 33312.0 |
| 3-oxoacyl-acp reductase | CY658_01380 | Not Available | Negative | 313009 - 313806 | 27186.9 |
| poly-beta-1,6-n-acetyl-d-glucosamine biosynthesis protein pgad | CY658_01385 | Not Available | Negative | 313940 - 314506 | 21181.8 |
| poly-beta-1,6 n-acetyl-d-glucosamine synthase | CY658_01390 | Not Available | Negative | 314496 - 315776 | 48859.3 |
| poly-beta-1,6-n-acetyl-d-glucosamine n-deacetylase pgab | CY658_01395 | Not Available | Negative | 315773 - 317839 | 77252.5 |
| poly-beta-1,6 n-acetyl-d-glucosamine export porin pgaa | CY658_01400 | Not Available | Negative | 317848 - 320532 | 97656.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
