Variovorax sp. RO1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. RO1 is a rod-shaped bacterium characterized by having a single replicon. This organism is part of the genus Variovorax, which is known for its metabolic versatility, enabling it to thrive in various environments. The accession number for Variovorax sp. RO1 is PKMT00000000.1, which provides a reference for genetic and genomic studies related to this strain. As a member of the Variovorax genus, Variovorax sp. RO1 may possess capabilities that allow it to degrade a range of organic compounds, contributing to bioremediation processes. The ability to utilize diverse substrates can make this bacterium significant in ecological contexts, particularly in environments impacted by pollution or organic waste. Understanding the traits of Variovorax sp. RO1, including its rod shape and genetic structure, provides insights into its potential applications in environmental microbiology. The metabolic capabilities associated with the Variovorax genus suggest that strains like RO1 could play a role in nutrient cycling and the breakdown of complex organic materials in various ecosystems. Overall, the study of Variovorax sp. RO1 can enhance our understanding of microbial diversity and its ecological implications in bioremediation and environmental sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. RO1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. RO1 scaffold_15, whole genome shotgun sequence.

Gene Summary

Adenine Count

1118858 bp

Thymine Count

1123229 bp

Guanine Count

2321917 bp

Cytosine Count

2307160 bp

Genome Length

6871199 bp

Protein-coding Genes

6263 genes

Non-Coding Genes

91 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion system baseplate subunit tssgCY658_00560Not AvailablePositive132649 - 13373440910.6
type vi secretion system atpase tsshCY658_00565Not AvailablePositive133774 - 13647698409.9
type vi secretion system tip protein vgrgCY658_00570Not AvailablePositive136517 - 139339102367.0
hypothetical proteinCY658_00575Not AvailablePositive139369 - 14196693179.6
hypothetical proteinCY658_00580Not AvailablePositive141983 - 14303537402.4
hypothetical proteinCY658_00585Not AvailablePositive143050 - 14376925276.6
duf4150 domain-containing proteinCY658_00590Not AvailablePositive143779 - 14417413538.8
type vi secretion system-associated fha domain protein taghCY658_00595Not AvailablePositive144329 - 14601157549.5
serine/threonine-protein phosphataseCY658_00600Not AvailablePositive146053 - 14684728344.5
hypothetical proteinCY658_00605Not AvailableNegative146968 - 14746818726.1

Displaying genes 181 – 190 of 6354 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.