Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. RO1 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1118858 bp
Thymine Count
1123229 bp
Guanine Count
2321917 bp
Cytosine Count
2307160 bp
Genome Length
6871199 bp
Protein-coding Genes
6263 genes
Non-Coding Genes
91 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system baseplate subunit tssg | CY658_00560 | Not Available | Positive | 132649 - 133734 | 40910.6 |
| type vi secretion system atpase tssh | CY658_00565 | Not Available | Positive | 133774 - 136476 | 98409.9 |
| type vi secretion system tip protein vgrg | CY658_00570 | Not Available | Positive | 136517 - 139339 | 102367.0 |
| hypothetical protein | CY658_00575 | Not Available | Positive | 139369 - 141966 | 93179.6 |
| hypothetical protein | CY658_00580 | Not Available | Positive | 141983 - 143035 | 37402.4 |
| hypothetical protein | CY658_00585 | Not Available | Positive | 143050 - 143769 | 25276.6 |
| duf4150 domain-containing protein | CY658_00590 | Not Available | Positive | 143779 - 144174 | 13538.8 |
| type vi secretion system-associated fha domain protein tagh | CY658_00595 | Not Available | Positive | 144329 - 146011 | 57549.5 |
| serine/threonine-protein phosphatase | CY658_00600 | Not Available | Positive | 146053 - 146847 | 28344.5 |
| hypothetical protein | CY658_00605 | Not Available | Negative | 146968 - 147468 | 18726.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
