Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. RO1 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1118858 bp
Thymine Count
1123229 bp
Guanine Count
2321917 bp
Cytosine Count
2307160 bp
Genome Length
6871199 bp
Protein-coding Genes
6263 genes
Non-Coding Genes
91 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferredoxin reductase | CY658_04725 | Not Available | Positive | 1001353 - 1002576 | 42645.3 |
| bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | CY658_04730 | Not Available | Positive | 1002717 - 1004768 | 72421.1 |
| dna mismatch repair protein muts | CY658_04735 | Not Available | Negative | 1004899 - 1005558 | 23995.0 |
| jab domain-containing protein | CY658_04740 | Not Available | Negative | 1005558 - 1006235 | 24616.1 |
| peptidylprolyl isomerase | CY658_04745 | Not Available | Positive | 1006343 - 1006786 | 15654.5 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | CY658_04750 | Not Available | Positive | 1006783 - 1007751 | 34981.9 |
| threonine dehydratase | CY658_04755 | Not Available | Positive | 1007748 - 1008713 | 33569.6 |
| serine--trna ligase | CY658_04760 | Not Available | Positive | 1008777 - 1010108 | 48256.8 |
| Trna-ser | Not Available | Not Available | Positive | 1010166 - 1010255 | Not Available |
| hypothetical protein | CY658_05125 | Not Available | Positive | 1056647 - 1057192 | 19447.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
