Shewanella sp. GutDb-MelDb

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella sp. GutDb-MelDb is a bacterium characterized by the presence of flagella, which likely contributes to its motility in various environments. This species possesses two replicons, indicating a complex genomic structure that may enhance its adaptability and functionality in diverse ecological niches. The organism has been cataloged with the following accessions: NZ_CM009123.1 and PJBM00000000.1, which provide further genomic details that can be explored in public databases for more comprehensive genetic information. The presence of flagella suggests that Shewanella sp. GutDb-MelDb is capable of movement, which can enhance its ability to colonize different habitats, potentially including both aquatic and terrestrial environments. The dual replicon system may offer advantages in terms of genetic diversity and metabolic versatility, allowing the bacterium to thrive under varying environmental conditions. From a biological or ecological perspective, the traits of Shewanella sp. GutDb-MelDb suggest that it may play a significant role in biogeochemical cycles, particularly in the reduction of metals and organic compounds. Its adaptability and motility could facilitate interactions with other microorganisms and contribute to nutrient cycling within microbial communities. Understanding the specific ecological roles of Shewanella sp. GutDb-MelDb could provide insights into its potential applications in bioremediation efforts or in the study of microbial ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella sp. GutDb-MelDb
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shewanella sp. GutDb-MelDb contig4, whole genome shotgun sequence.

Gene Summary

Adenine Count

1411132 bp

Thymine Count

1410472 bp

Guanine Count

1083528 bp

Cytosine Count

1089600 bp

Genome Length

4994732 bp

Protein-coding Genes

1058 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna (uridine(54)-c5)-methyltransferase trmaCXF82_04050Not AvailablePositive858341 - 85943842121.5
hth-type transcriptional repressor fabrCXF82_04055Not AvailableNegative859500 - 86011422801.5
acyl-coa desaturaseCXF82_04060Not AvailablePositive860255 - 86136143060.0
selenide, water dikinase seldCXF82_04065Not AvailablePositive861515 - 86255236324.1
trna 2-selenouridine(34) synthase mnmhCXF82_04070Not AvailablePositive862552 - 86364941287.4
mfs transporterCXF82_04075Not AvailableNegative863703 - 86536460886.4
3'(2'),5'-bisphosphate nucleotidaseCXF82_04080Not AvailableNegative865471 - 86628629775.3
adp compounds hydrolase nudeCXF82_04085Not AvailableNegative866328 - 86688220982.2
gmp/imp nucleotidaseCXF82_04090Not AvailablePositive866982 - 86765925998.2
type ii secretion system protein nCXF82_04095Not AvailableNegative867724 - 86848227229.4

Displaying genes 801 – 810 of 1155 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.