Shewanella sp. GutDb-MelDb

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella sp. GutDb-MelDb is a bacterium characterized by the presence of flagella, which likely contributes to its motility in various environments. This species possesses two replicons, indicating a complex genomic structure that may enhance its adaptability and functionality in diverse ecological niches. The organism has been cataloged with the following accessions: NZ_CM009123.1 and PJBM00000000.1, which provide further genomic details that can be explored in public databases for more comprehensive genetic information. The presence of flagella suggests that Shewanella sp. GutDb-MelDb is capable of movement, which can enhance its ability to colonize different habitats, potentially including both aquatic and terrestrial environments. The dual replicon system may offer advantages in terms of genetic diversity and metabolic versatility, allowing the bacterium to thrive under varying environmental conditions. From a biological or ecological perspective, the traits of Shewanella sp. GutDb-MelDb suggest that it may play a significant role in biogeochemical cycles, particularly in the reduction of metals and organic compounds. Its adaptability and motility could facilitate interactions with other microorganisms and contribute to nutrient cycling within microbial communities. Understanding the specific ecological roles of Shewanella sp. GutDb-MelDb could provide insights into its potential applications in bioremediation efforts or in the study of microbial ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella sp. GutDb-MelDb
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shewanella sp. GutDb-MelDb contig4, whole genome shotgun sequence.

Gene Summary

Adenine Count

1411132 bp

Thymine Count

1410472 bp

Guanine Count

1083528 bp

Cytosine Count

1089600 bp

Genome Length

4994732 bp

Protein-coding Genes

1058 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gluconate transporterCXF82_02590Not AvailablePositive560409 - 56176746893.6
glycerate kinaseCXF82_02595Not AvailablePositive561937 - 56309439830.9
putative pyridoxal-dependent aspartate 1-decarboxylaseCXF82_02600Not AvailablePositive563289 - 56493560613.4
class i sam-dependent methyltransferaseCXF82_02605Not AvailableNegative565014 - 56564923777.6
hypothetical proteinCXF82_02615Not AvailablePositive566606 - 56693513094.5
50s ribosomal protein l17CXF82_02620Not AvailableNegative567191 - 56758314690.9
dna-directed rna polymerase subunit alphaCXF82_02625Not AvailableNegative567623 - 56861236101.2
30s ribosomal protein s4CXF82_02630Not AvailableNegative568637 - 56925723379.2
30s ribosomal protein s11CXF82_02635Not AvailableNegative569293 - 56968513938.7
30s ribosomal protein s13CXF82_02640Not AvailableNegative569700 - 57005613277.4

Displaying genes 511 – 520 of 1155 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.