Deinococcus koreensis str. SJW1-2

Kingdom

Thermotogati

Phylum

Deinococcota

Class

Deinococci

Order

Deinococcales

Family

Deinococcaceae

Genus

Deinococcus

Description

Deinococcus koreensis str. SJW1-2 is characterized by the presence of flagella and possesses a single replicon. The strain is cataloged under the accession number PPPD00000000.1, which provides a reference point for genomic and other biological information related to this organism. As a member of the genus Deinococcus, this strain is likely to exhibit resilience to extreme environmental conditions, a hallmark trait of many Deinococcus species. The presence of flagella suggests that Deinococcus koreensis str. SJW1-2 may have the ability to move in its environment, which could be advantageous for navigating towards resources or adapting to changing conditions. The single replicon feature may indicate a streamlined genomic structure, which can be beneficial for efficient replication and maintenance of genetic stability. This characteristic is particularly relevant in microbial ecology, where rapid adaptation and survival strategies are critical for thriving in diverse habitats. In summary, Deinococcus koreensis str. SJW1-2 is a flagellated bacterium with a single replicon, which may confer certain ecological advantages, such as mobility and efficient genetic operations. These traits suggest that this strain could play a role in its ecosystem, potentially influencing biogeochemical cycles or interacting with other microorganisms in its niche.

Taxonomy

KingdomThermotogati
PhylumDeinococcota
ClassDeinococci
OrderDeinococcales
FamilyDeinococcaceae
GenusDeinococcus
SpeciesDeinococcus koreensis
StrainSJW1-2

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Deinococcus koreensis strain SJW1-2 SJW1-2_contig6, whole genome

Gene Summary

Adenine Count

686159 bp

Thymine Count

687375 bp

Guanine Count

1560160 bp

Cytosine Count

1567227 bp

Genome Length

4500921 bp

Protein-coding Genes

3978 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atpaseCVO96_17870Not AvailableNegative3841650 - 384267234534.4
d-xylose abc transporter atp-binding proteinCVO96_17875Not AvailableNegative3842672 - 384421954351.2
l-rhamnose mutarotaseCVO96_17880Not AvailableNegative3844230 - 384455912688.1
deor/glpr transcriptional regulatorCVO96_17885Not AvailablePositive3844690 - 384546627553.2
l-rhamnose isomeraseCVO96_17890Not AvailablePositive3845502 - 384670444375.1
bifunctional rhamnulose-1-phosphate aldolase/short-chain dehydrogenaseCVO96_17895Not AvailablePositive3846760 - 384885674468.5
rhamnulokinaseCVO96_17900Not AvailablePositive3848846 - 385032452498.6
phenylacetate--coa ligaseCVO96_17910Not AvailableNegative3852613 - 385389346535.9
kynureninaseCVO96_17915Not AvailablePositive3854098 - 385534844741.6
tryptophan 2,3-dioxygenaseCVO96_17920Not AvailablePositive3855345 - 385625033615.6

Displaying genes 3511 – 3520 of 4049 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.