Shewanella sp. OPT22

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella sp. OPT22 is a member of the genus Shewanella, characterized by the presence of flagella, which are essential for motility. This trait enables the organism to navigate its aquatic environment effectively, potentially enhancing its ability to colonize various niches and access nutrients. The genome of Shewanella sp. OPT22 is organized into a single replicon, indicating a streamlined genetic architecture which may facilitate efficient replication and maintenance of its genetic material. The accession number for its genomic data is PGVH00000000.1, providing a reference point for researchers interested in further studies on its genomic characteristics and functional capabilities. In the context of ecology, Shewanella species are known for their versatile metabolic pathways, including the ability to reduce metals and utilize a range of electron acceptors. This metabolic flexibility suggests that Shewanella sp. OPT22 could play a significant role in biogeochemical cycles, particularly in environments where organic matter is decomposed and electron transfers occur, such as sediments and aquatic systems. The presence of flagella and a single replicon could indicate an evolutionary adaptation allowing Shewanella sp. OPT22 to thrive in dynamic environments, making it a potential candidate for further investigation in studies related to environmental microbiology and bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella sp. OPT22
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shewanella sp. OPT22 SOPP22_69, whole genome shotgun sequence.

Gene Summary

Adenine Count

1339375 bp

Thymine Count

1332450 bp

Guanine Count

859368 bp

Cytosine Count

892202 bp

Genome Length

4425146 bp

Protein-coding Genes

3795 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pts iia-like nitrogen-regulatory protein ptsnSOPP22_19640Not AvailableNegative4401260 - 440170316210.8
ribosomal subunit interface proteinSOPP22_19645Not AvailableNegative4401706 - 440199311076.4
rna polymerase factor sigma-54SOPP22_19650Not AvailableNegative4402031 - 440350655420.9
lps export abc transporter atp-binding proteinSOPP22_19655Not AvailableNegative4403555 - 440428627281.0
lipopolysaccharide transport periplasmic protein lptaSOPP22_19660Not AvailableNegative4404283 - 440484019722.6
lps export abc transporter periplasmic protein lptcSOPP22_19665Not AvailableNegative4404827 - 440538421299.5
3-deoxy-manno-octulosonate-8-phosphatase kdscSOPP22_19670Not AvailableNegative4405381 - 440594120389.5
d-arabinose 5-phosphate isomeraseSOPP22_19675Not AvailableNegative4405943 - 440692034293.9
phospholipid abc transporter atp-binding protein mlafSOPP22_19680Not AvailablePositive4407216 - 440802829568.9
abc transporter permeaseSOPP22_19685Not AvailablePositive4408015 - 440880027992.0

Displaying genes 3871 – 3880 of 3903 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.