Shewanella sp. OPT22

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella sp. OPT22 is a member of the genus Shewanella, characterized by the presence of flagella, which are essential for motility. This trait enables the organism to navigate its aquatic environment effectively, potentially enhancing its ability to colonize various niches and access nutrients. The genome of Shewanella sp. OPT22 is organized into a single replicon, indicating a streamlined genetic architecture which may facilitate efficient replication and maintenance of its genetic material. The accession number for its genomic data is PGVH00000000.1, providing a reference point for researchers interested in further studies on its genomic characteristics and functional capabilities. In the context of ecology, Shewanella species are known for their versatile metabolic pathways, including the ability to reduce metals and utilize a range of electron acceptors. This metabolic flexibility suggests that Shewanella sp. OPT22 could play a significant role in biogeochemical cycles, particularly in environments where organic matter is decomposed and electron transfers occur, such as sediments and aquatic systems. The presence of flagella and a single replicon could indicate an evolutionary adaptation allowing Shewanella sp. OPT22 to thrive in dynamic environments, making it a potential candidate for further investigation in studies related to environmental microbiology and bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella sp. OPT22
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shewanella sp. OPT22 SOPP22_69, whole genome shotgun sequence.

Gene Summary

Adenine Count

1339375 bp

Thymine Count

1332450 bp

Guanine Count

859368 bp

Cytosine Count

892202 bp

Genome Length

4425146 bp

Protein-coding Genes

3795 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyrroline-5-carboxylate reductaseSOPP22_17825Not AvailablePositive3985417 - 398587216728.6
hypothetical proteinSOPP22_17830Not AvailableNegative3985945 - 3988713105252.0
protein translocase subunit secfSOPP22_17835Not AvailableNegative3988848 - 398975632792.5
protein translocase subunit secdSOPP22_17840Not AvailableNegative3989759 - 399157065748.0
hypothetical proteinSOPP22_17845Not AvailableNegative3991672 - 399210016074.2
hypothetical proteinSOPP22_17850Not AvailablePositive3992376 - 3995627121627.0
transcription elongation factor greaSOPP22_17855Not AvailableNegative3995795 - 399627117515.8
acrb/acrd/acrf family proteinSOPP22_17860Not AvailableNegative3996426 - 3999503111356.0
efflux transporter periplasmic adaptor subunitSOPP22_17865Not AvailableNegative3999503 - 400067843204.4
carbamoyl phosphate synthase large subunitSOPP22_17870Not AvailableNegative4000891 - 4004109117985.0

Displaying genes 3511 – 3520 of 3903 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.