Shewanella sp. OPT22

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella sp. OPT22 is a member of the genus Shewanella, characterized by the presence of flagella, which are essential for motility. This trait enables the organism to navigate its aquatic environment effectively, potentially enhancing its ability to colonize various niches and access nutrients. The genome of Shewanella sp. OPT22 is organized into a single replicon, indicating a streamlined genetic architecture which may facilitate efficient replication and maintenance of its genetic material. The accession number for its genomic data is PGVH00000000.1, providing a reference point for researchers interested in further studies on its genomic characteristics and functional capabilities. In the context of ecology, Shewanella species are known for their versatile metabolic pathways, including the ability to reduce metals and utilize a range of electron acceptors. This metabolic flexibility suggests that Shewanella sp. OPT22 could play a significant role in biogeochemical cycles, particularly in environments where organic matter is decomposed and electron transfers occur, such as sediments and aquatic systems. The presence of flagella and a single replicon could indicate an evolutionary adaptation allowing Shewanella sp. OPT22 to thrive in dynamic environments, making it a potential candidate for further investigation in studies related to environmental microbiology and bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella sp. OPT22
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shewanella sp. OPT22 SOPP22_69, whole genome shotgun sequence.

Gene Summary

Adenine Count

1339375 bp

Thymine Count

1332450 bp

Guanine Count

859368 bp

Cytosine Count

892202 bp

Genome Length

4425146 bp

Protein-coding Genes

3795 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion proteinSOPP22_13415Not AvailablePositive3064224 - 306560951045.1
hcp1 family type vi secretion system effectorSOPP22_13420Not AvailablePositive3065643 - 306616118371.6
type vi secretion system contractile sheath small subunitSOPP22_13425Not AvailablePositive3066231 - 306674019012.4
type vi secretion system contractile sheath large subunitSOPP22_13430Not AvailablePositive3066740 - 306822154375.5
type vi secretion system contractile sheath large subunitSOPP22_13435Not AvailablePositive3068282 - 306964952433.4
type vi secretion system baseplate subunit tsseSOPP22_13440Not AvailablePositive3069646 - 307006815811.7
type vi secretion system baseplate subunit tssfSOPP22_13445Not AvailablePositive3070061 - 307184267279.5
type vi secretion protein vasb-1SOPP22_13450Not AvailablePositive3071824 - 307280737000.5
type vi secretion system atpase tsshSOPP22_13455Not AvailablePositive3072817 - 307542396106.0
hypothetical proteinSOPP22_13460Not AvailablePositive3075482 - 307649838131.3

Displaying genes 2641 – 2650 of 3903 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.