Shewanella sp. OPT22

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella sp. OPT22 is a member of the genus Shewanella, characterized by the presence of flagella, which are essential for motility. This trait enables the organism to navigate its aquatic environment effectively, potentially enhancing its ability to colonize various niches and access nutrients. The genome of Shewanella sp. OPT22 is organized into a single replicon, indicating a streamlined genetic architecture which may facilitate efficient replication and maintenance of its genetic material. The accession number for its genomic data is PGVH00000000.1, providing a reference point for researchers interested in further studies on its genomic characteristics and functional capabilities. In the context of ecology, Shewanella species are known for their versatile metabolic pathways, including the ability to reduce metals and utilize a range of electron acceptors. This metabolic flexibility suggests that Shewanella sp. OPT22 could play a significant role in biogeochemical cycles, particularly in environments where organic matter is decomposed and electron transfers occur, such as sediments and aquatic systems. The presence of flagella and a single replicon could indicate an evolutionary adaptation allowing Shewanella sp. OPT22 to thrive in dynamic environments, making it a potential candidate for further investigation in studies related to environmental microbiology and bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella sp. OPT22
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shewanella sp. OPT22 SOPP22_69, whole genome shotgun sequence.

Gene Summary

Adenine Count

1339375 bp

Thymine Count

1332450 bp

Guanine Count

859368 bp

Cytosine Count

892202 bp

Genome Length

4425146 bp

Protein-coding Genes

3795 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribosome biogenesis gtpase derSOPP22_10180Not AvailableNegative2343409 - 234487554674.7
outer membrane protein assembly factor bambSOPP22_10185Not AvailableNegative2344985 - 234616342297.8
hypothetical proteinSOPP22_10190Not AvailableNegative2346174 - 234679422157.0
histidine--trna ligaseSOPP22_10195Not AvailableNegative2346809 - 234808347507.7
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthaseSOPP22_10200Not AvailableNegative2348170 - 234928540719.1
hypothetical proteinSOPP22_10205Not AvailableNegative2349353 - 235036337109.7
type iv pilus biogenesis/stability protein pilwSOPP22_10210Not AvailableNegative2350363 - 235114829953.9
bifunctional trna (adenosine(37)-c2)-methyltransferase trmg/ribosomal rna large subunit methyltransferase rlmnSOPP22_10215Not AvailableNegative2351186 - 235230741276.0
hypothetical proteinSOPP22_10220Not AvailablePositive2352512 - 235340833820.3
50s rrna methyltransferaseSOPP22_10225Not AvailableNegative2353416 - 235454941842.3

Displaying genes 2011 – 2020 of 3903 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.