Hydrogenobaculum sp.

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Aquificota

Class

Aquificia

Order

Aquificales

Family

Aquificaceae

Genus

Hydrogenobaculum

Description

Hydrogenobaculum sp. is a Gram-negative, rod-shaped bacterium characterized by its unique metabolic capabilities. This organism has a single replicon, indicating a streamlined genome structure that may be advantageous for its adaptability in various environments. The accession number for its genomic data is PNJC00000000.1, which serves as a reference for further research and analysis. The Gram-negative classification of Hydrogenobaculum sp. suggests that it possesses a double membrane structure, which is typical of this group of bacteria. This structural feature may contribute to its resilience and ability to thrive in specific ecological niches, particularly those where competition and environmental stressors are present. Ecologically, Hydrogenobaculum sp. is noteworthy for its potential role in biogeochemical cycles, particularly in environments where hydrogen and other inorganic compounds are prevalent. The traits of this organism indicate that it may play a part in energy acquisition through the oxidation of hydrogen, which can be a vital process in certain habitats, such as geothermal springs or hydrothermal vents. This ability to utilize inorganic substrates for energy underscores the importance of Hydrogenobaculum sp. in microbial ecosystems, where it may contribute to nutrient cycling and energy flow.

Taxonomy

KingdomPseudomonadati
PhylumAquificota
ClassAquificia
OrderAquificales
FamilyAquificaceae
GenusHydrogenobaculum
SpeciesHydrogenobaculum sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature55
Temperature rangeNot Available
Habitatoutflow channel of Dragon Spring (DS), Norris Geyser Basin, in Yellowstone National Park (YNP), WY; YNP geothermal feature
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Hydrogenobaculum sp. isolate ARK-05

Gene Summary

Adenine Count

485662 bp

Thymine Count

484666 bp

Guanine Count

265790 bp

Cytosine Count

263259 bp

Genome Length

1499377 bp

Protein-coding Genes

1637 genes

Non-Coding Genes

40 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
s-adenosylhomocysteine deaminaseC0170_00400Not AvailablePositive70450 - 7172747519.6
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinaseC0170_00405Not AvailablePositive71724 - 7220919068.4
duf2309 domain-containing proteinC0170_00410Not AvailableNegative72213 - 75098112367.0
hypothetical proteinC0170_00415Not AvailableNegative75092 - 7582327542.6
porphobilinogen synthaseC0170_00420Not AvailablePositive75894 - 7686236375.8
aldehyde dehydrogenaseC0170_00425Not AvailableNegative76854 - 7828752818.4
amino acid permeaseC0170_00430Not AvailablePositive78354 - 7972449761.3
bifunctional 3'-5' exonuclease/dna polymeraseC0170_00435Not AvailablePositive79721 - 8147867121.3
abc transporter substrate-binding proteinC0170_00440Not AvailablePositive81478 - 8241334843.9
3-deoxy-d-manno-octulosonic acid transferaseC0170_00450Not AvailablePositive82630 - 8358536720.1

Displaying genes 81 – 90 of 1677 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.