Porphyromonadaceae bacterium

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Porphyromonadaceae

Genus

Description

The Porphyromonadaceae bacterium is characterized by having two replicons, which indicates a complex genomic structure that may play a role in its adaptability and functionality within its environment. The genomic data for this bacterium is indexed under two accessions: DNQZ00000000.1 and DNZS00000000.1. This family of bacteria, Porphyromonadaceae, is typically found in various environments, including the gastrointestinal tracts of mammals, where they can contribute to the microbiome's overall health and function. Bacteria in this family are known for their roles in the degradation of complex polysaccharides and other organic materials, which can have significant implications for nutrient cycling and energy flow within ecosystems. The presence of two replicons may suggest a potential for increased genetic diversity and adaptability, allowing the Porphyromonadaceae bacterium to thrive in varying conditions. This trait could enhance its survival and metabolic capabilities, especially in environments rich in organic matter. In summary, the Porphyromonadaceae bacterium, with its unique genomic structure and ecological roles, exemplifies the intricate relationships within microbial communities, emphasizing the importance of bacterial diversity in maintaining healthy ecosystems.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG TPA_asm: Porphyromonadaceae bacterium isolate UBA11018

Gene Summary

Adenine Count

895595 bp

Thymine Count

902542 bp

Guanine Count

733581 bp

Cytosine Count

728343 bp

Genome Length

3363639 bp

Protein-coding Genes

2984 genes

Non-Coding Genes

39 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methylmalonyl-coa carboxyltransferaseDDW85_09180Not AvailableNegative2022147 - 202370356936.2
methylmalonyl-coa epimeraseDDW85_09185Not AvailableNegative2023772 - 202417614845.9
6-phosphofructokinaseDDW85_09190Not AvailableNegative2024282 - 202526835671.9
4-hydroxy-3-methylbut-2-enyl diphosphate reductaseDDW85_09195Not AvailableNegative2025370 - 202626633329.1
(d)cmp kinaseDDW85_09200Not AvailableNegative2026241 - 202696027203.3
hypothetical proteinDDW85_09205Not AvailablePositive2027145 - 202763019146.4
2-oxoacid:ferredoxin oxidoreductase subunit betaDDW85_09210Not AvailableNegative2027683 - 202872638366.9
2-oxoacid:acceptor oxidoreductase subunit alphaDDW85_09215Not AvailableNegative2028730 - 203024455760.6
2-oxoacid:acceptor oxidoreductase subunit alphaDDW85_09220Not AvailableNegative2030513 - 20307909655.37
isocitrate lyase/phosphoenolpyruvate mutase family proteinDDW85_09225Not AvailableNegative2030986 - 203175628321.7

Displaying genes 4831 – 4840 of 6157 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.