Clostridium sp. HMb25

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium sp. HMb25 is a bacterium characterized by having a single replicon, indicating a streamlined genetic organization. This trait can influence the organism's replication and overall genomic stability. The bacterium is cataloged under the accession number PDDG00000000.1, which serves as a unique identifier for its genomic data. As a member of the genus Clostridium, this species is likely to exhibit anaerobic metabolism, which is a common feature among clostridia. These organisms are typically found in environments devoid of oxygen, such as soil, sediments, and the gastrointestinal tracts of animals. Clostridium species are known for their ability to produce endospores, enabling them to survive harsh conditions. This adaptation is crucial for their ecological niches, allowing them to persist in environments where resources may be sporadic or where they may face competitive pressures from other microorganisms. The ecological role of Clostridium sp. HMb25 could be significant, particularly in the degradation of complex organic materials, contributing to nutrient cycling in its environment. Understanding its specific interactions within microbial communities can provide insights into its potential applications in biotechnology, such as waste treatment or bioenergy production. Overall, the unique traits of Clostridium sp. HMb25 underline its potential significance in both ecological systems and applied microbiological research.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium sp. HMb25
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clostridium sp. HMb25 unitig_8, whole genome shotgun sequence.

Gene Summary

Adenine Count

1413369 bp

Thymine Count

1433104 bp

Guanine Count

1286940 bp

Cytosine Count

1310597 bp

Genome Length

5444010 bp

Protein-coding Genes

3969 genes

Non-Coding Genes

324 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sigma-54-dependent transcriptional regulatorCRH03_10470Not AvailableNegative2153915 - 215571166846.8
alcohol dehydrogenaseCRH03_10480Not AvailablePositive2157261 - 215842741864.6
4-hydroxy-tetrahydrodipicolinate synthaseCRH03_10485Not AvailablePositive2158477 - 215937932463.9
4-hydroxythreonine-4-phosphate dehydrogenase pdxaCRH03_10490Not AvailablePositive2159419 - 216046837715.4
hypothetical proteinCRH03_10495Not AvailablePositive2160482 - 216160940094.3
c4-dicarboxylate abc transporter permeaseCRH03_10500Not AvailablePositive2161677 - 216362969467.5
yhch/yjgk/yial family proteinCRH03_10505Not AvailablePositive2163660 - 216410616704.7
sodium:glutamate symporterCRH03_10510Not AvailablePositive2164419 - 216563642810.9
laci family transcriptional regulatorCRH03_10515Not AvailablePositive2166063 - 216710638604.8
sugar abc transporter substrate-binding proteinCRH03_10520Not AvailablePositive2167155 - 216826140407.6

Displaying genes 1921 – 1930 of 4293 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.