Campylobacter sp. MIT 12-5580

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Campylobacteraceae

Genus

Campylobacter

Description

Campylobacter sp. MIT 12-5580 is characterized by having a single replicon, which is a significant trait in understanding its genetic structure and replication mechanisms. The strain is cataloged under the accession number NXLK00000000.1, which provides a reference for researchers seeking detailed genomic information. Campylobacter species are generally known for their role as pathogens, particularly in causing gastroenteritis in humans and animals. While specific pathogenicity data for MIT 12-5580 is not provided, the genus Campylobacter is often associated with foodborne illnesses, primarily through contaminated poultry, water, and unpasteurized dairy products. In terms of its ecological role, Campylobacter sp. are typically found in the intestines of birds and mammals, indicating a potential adaptation to a host-associated lifestyle. Their presence in these environments suggests they may play a role in the gut microbiome of various animals, potentially influencing the health and disease dynamics within these ecosystems. The single replicon nature of Campylobacter sp. MIT 12-5580 might provide insights into its genomic stability and adaptability, which is crucial for survival in various environments. Understanding these traits can help elucidate the ecological interactions and potential impact this strain may have in both natural and agricultural settings.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyCampylobacteraceae
GenusCampylobacter
SpeciesCampylobacter sp. MIT 12-5580
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Campylobacter sp. MIT 12-5580
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Campylobacter sp. MIT 12-5580 C12-5580_40_333170.256, whole genome

Gene Summary

Adenine Count

594953 bp

Thymine Count

600203 bp

Guanine Count

325916 bp

Cytosine Count

308267 bp

Genome Length

1829339 bp

Protein-coding Genes

1777 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
outer membrane protein assembly factor bamaCQA38_07915Not AvailablePositive1566935 - 156916083202.1
acetyl-coa carboxylase carboxyl transferase subunit betaCQA38_07920Not AvailablePositive1569238 - 157008030621.3
23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmhCQA38_07925Not AvailablePositive1570084 - 157053617448.1
rna polymerase-binding protein dksaCQA38_07930Not AvailablePositive1570546 - 157090213669.1
hypothetical proteinCQA38_07935Not AvailablePositive1570899 - 157188538574.2
trna dihydrouridine synthase dusbCQA38_07940Not AvailablePositive1571889 - 157280634271.8
hypothetical proteinCQA38_07945Not AvailablePositive1573002 - 157332812425.0
flagellar hook-length control protein flikCQA38_07950Not AvailablePositive1573350 - 157548279319.3
flagellar basal body rod modification proteinCQA38_07955Not AvailablePositive1575533 - 157626125925.4
flagellar hook protein flgeCQA38_07960Not AvailablePositive1576287 - 157793058117.9

Displaying genes 1571 – 1580 of 1823 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.