Campylobacter sp. MIT 12-5580

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Campylobacteraceae

Genus

Campylobacter

Description

Campylobacter sp. MIT 12-5580 is characterized by having a single replicon, which is a significant trait in understanding its genetic structure and replication mechanisms. The strain is cataloged under the accession number NXLK00000000.1, which provides a reference for researchers seeking detailed genomic information. Campylobacter species are generally known for their role as pathogens, particularly in causing gastroenteritis in humans and animals. While specific pathogenicity data for MIT 12-5580 is not provided, the genus Campylobacter is often associated with foodborne illnesses, primarily through contaminated poultry, water, and unpasteurized dairy products. In terms of its ecological role, Campylobacter sp. are typically found in the intestines of birds and mammals, indicating a potential adaptation to a host-associated lifestyle. Their presence in these environments suggests they may play a role in the gut microbiome of various animals, potentially influencing the health and disease dynamics within these ecosystems. The single replicon nature of Campylobacter sp. MIT 12-5580 might provide insights into its genomic stability and adaptability, which is crucial for survival in various environments. Understanding these traits can help elucidate the ecological interactions and potential impact this strain may have in both natural and agricultural settings.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyCampylobacteraceae
GenusCampylobacter
SpeciesCampylobacter sp. MIT 12-5580
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Campylobacter sp. MIT 12-5580
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Campylobacter sp. MIT 12-5580 C12-5580_40_333170.256, whole genome

Gene Summary

Adenine Count

594953 bp

Thymine Count

600203 bp

Guanine Count

325916 bp

Cytosine Count

308267 bp

Genome Length

1829339 bp

Protein-coding Genes

1777 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sodium-dependent transporterCQA38_05545Not AvailablePositive1079493 - 108084249384.0
sodium-dependent transporterCQA38_05550Not AvailablePositive1080863 - 108220050301.7
biotin attachment proteinCQA38_05555Not AvailablePositive1082271 - 108407365404.6
phosphoenolpyruvate carboxykinase (atp)CQA38_05560Not AvailablePositive1084093 - 108566758425.5
argininosuccinate lyaseCQA38_05565Not AvailablePositive1085671 - 108705351629.6
hypothetical proteinCQA38_05570Not AvailableNegative1087391 - 108786418507.0
cysteine methyltransferaseCQA38_05575Not AvailablePositive1088068 - 108865221442.3
histidine triad nucleotide-binding proteinCQA38_05580Not AvailableNegative1088697 - 108901411968.8
phenylalanine--trna ligase subunit alphaCQA38_05585Not AvailablePositive1089134 - 109012637750.7
phenylalanine--trna ligase subunit betaCQA38_05590Not AvailablePositive1090123 - 109244787144.4

Displaying genes 1101 – 1110 of 1823 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.