Campylobacter sp. MIT 12-5580

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Campylobacteraceae

Genus

Campylobacter

Description

Campylobacter sp. MIT 12-5580 is characterized by having a single replicon, which is a significant trait in understanding its genetic structure and replication mechanisms. The strain is cataloged under the accession number NXLK00000000.1, which provides a reference for researchers seeking detailed genomic information. Campylobacter species are generally known for their role as pathogens, particularly in causing gastroenteritis in humans and animals. While specific pathogenicity data for MIT 12-5580 is not provided, the genus Campylobacter is often associated with foodborne illnesses, primarily through contaminated poultry, water, and unpasteurized dairy products. In terms of its ecological role, Campylobacter sp. are typically found in the intestines of birds and mammals, indicating a potential adaptation to a host-associated lifestyle. Their presence in these environments suggests they may play a role in the gut microbiome of various animals, potentially influencing the health and disease dynamics within these ecosystems. The single replicon nature of Campylobacter sp. MIT 12-5580 might provide insights into its genomic stability and adaptability, which is crucial for survival in various environments. Understanding these traits can help elucidate the ecological interactions and potential impact this strain may have in both natural and agricultural settings.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyCampylobacteraceae
GenusCampylobacter
SpeciesCampylobacter sp. MIT 12-5580
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Campylobacter sp. MIT 12-5580
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Campylobacter sp. MIT 12-5580 C12-5580_40_333170.256, whole genome

Gene Summary

Adenine Count

594953 bp

Thymine Count

600203 bp

Guanine Count

325916 bp

Cytosine Count

308267 bp

Genome Length

1829339 bp

Protein-coding Genes

1777 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna recombination protein recnCQA38_05090Not AvailablePositive992490 - 99401658517.5
diguanylate cyclase response regulatorCQA38_05095Not AvailablePositive994216 - 99546346215.7
hydrolase tatdCQA38_05100Not AvailablePositive995454 - 99626030638.9
lytic transglycosylaseCQA38_05105Not AvailablePositive996269 - 99739642871.8
septal ring lytic transglycosylase rlpa family lipoproteinCQA38_05110Not AvailablePositive997350 - 99817729765.2
3-deoxy-d-manno-octulosonate 8-phosphate phosphataseCQA38_05115Not AvailablePositive998191 - 99867918317.4
hypothetical proteinCQA38_05120Not AvailablePositive998670 - 99917619399.0
lipopolysaccharide transport periplasmic protein lptaCQA38_05125Not AvailablePositive999176 - 99961916642.8
yiha family ribosome biogenesis gtp-binding proteinCQA38_05130Not AvailablePositive999616 - 100020622413.0
hypothetical proteinCQA38_05135Not AvailablePositive1000208 - 100071720646.4

Displaying genes 1011 – 1020 of 1823 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.