Chitinophaga sp. MD30

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga sp. MD30 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species is notable for having a single replicon, which is significant for its genetic organization and replication processes. The genomic information for Chitinophaga sp. MD30 is cataloged under the accession number NZ_CP023254.1, providing a reference for further studies and annotations regarding its genetic makeup. Chitinophaga species are generally known for their ability to degrade chitin, a key component of the exoskeletons of arthropods and the cell walls of fungi. This characteristic positions Chitinophaga sp. MD30 within a group of microorganisms that play a crucial role in nutrient cycling, particularly in environments rich in chitinous materials. The ability of these bacteria to break down chitin not only contributes to the decomposition of organic matter but also facilitates the availability of nitrogen and carbon in ecosystems, supporting various trophic levels. Understanding the traits and ecological roles of Chitinophaga sp. MD30 can provide insights into its potential applications in biotechnology, particularly in waste management and agriculture, where chitin degradation might enhance soil health and promote plant growth. The study of such microorganisms is essential for leveraging their natural capabilities in environmental and industrial processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga sp. MD30
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga sp. MD30 chromosome.

Gene Summary

Adenine Count

2014015 bp

Thymine Count

2002048 bp

Guanine Count

1824308 bp

Cytosine Count

1820761 bp

Genome Length

7661303 bp

Protein-coding Genes

5815 genes

Non-Coding Genes

81 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
susd/ragb family nutrient-binding outer membrane lipoproteinCK934_RS06800Not AvailablePositive1715851 - 171745260093.3
phosphonate degradation hd-domain oxygenaseCK934_RS06805Not AvailablePositive1717527 - 171809621168.0
duf5690 family proteinCK934_RS06810Not AvailablePositive1718198 - 171953850569.2
alpha-ribazole phosphataseCK934_RS06815Not AvailableNegative1719535 - 172009521014.9
adenosylcobinamide-gdp ribazoletransferaseCK934_RS06820Not AvailableNegative1720080 - 172085628580.8
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferaseCK934_RS06825Not AvailableNegative1720876 - 172191636869.0
bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferaseCK934_RS06830Not AvailableNegative1722001 - 172252219328.2
pkd-like domain-containing proteinCK934_RS06835Not AvailableNegative1722539 - 172289212979.6
abc transporter substrate-binding proteinCK934_RS06840Not AvailableNegative1722922 - 172385734667.6
cell surface proteinCK934_RS06845Not AvailableNegative1723940 - 172483331851.9

Displaying genes 1391 – 1400 of 5896 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.