Chitinophaga sp. MD30

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga sp. MD30 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species is notable for having a single replicon, which is significant for its genetic organization and replication processes. The genomic information for Chitinophaga sp. MD30 is cataloged under the accession number NZ_CP023254.1, providing a reference for further studies and annotations regarding its genetic makeup. Chitinophaga species are generally known for their ability to degrade chitin, a key component of the exoskeletons of arthropods and the cell walls of fungi. This characteristic positions Chitinophaga sp. MD30 within a group of microorganisms that play a crucial role in nutrient cycling, particularly in environments rich in chitinous materials. The ability of these bacteria to break down chitin not only contributes to the decomposition of organic matter but also facilitates the availability of nitrogen and carbon in ecosystems, supporting various trophic levels. Understanding the traits and ecological roles of Chitinophaga sp. MD30 can provide insights into its potential applications in biotechnology, particularly in waste management and agriculture, where chitin degradation might enhance soil health and promote plant growth. The study of such microorganisms is essential for leveraging their natural capabilities in environmental and industrial processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga sp. MD30
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga sp. MD30 chromosome.

Gene Summary

Adenine Count

2014015 bp

Thymine Count

2002048 bp

Guanine Count

1824308 bp

Cytosine Count

1820761 bp

Genome Length

7661303 bp

Protein-coding Genes

5815 genes

Non-Coding Genes

81 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hydroxypyruvate isomerase family proteinCK934_RS05180Not AvailableNegative1341217 - 134214634657.8
formylglycine-generating enzyme family proteinCK934_RS05185Not AvailablePositive1342328 - 134329936267.7
gfo/idh/moca family proteinCK934_RS05190Not AvailablePositive1343447 - 134478450077.0
d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidaseCK934_RS05195Not AvailablePositive1344893 - 134620349827.0
carboxypeptidase-like regulatory domain-containing proteinCK934_RS05200Not AvailableNegative1346251 - 134799961712.6
susc/raga family tonb-linked outer membrane proteinCK934_RS05205Not AvailablePositive1348558 - 1351641114953.0
ragb/susd family nutrient uptake outer membrane proteinCK934_RS05210Not AvailablePositive1351653 - 135341367235.5
peroxiredoxin family proteinCK934_RS05215Not AvailableNegative1353498 - 135404019947.1
gfo/idh/moca family proteinCK934_RS05220Not AvailableNegative1354137 - 135554952097.1
gfo/idh/moca family proteinCK934_RS05225Not AvailableNegative1355676 - 135712153766.4

Displaying genes 1071 – 1080 of 5896 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.