Microbacterium sp. UMB0228

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Microbacterium

Description

Microbacterium sp. UMB0228 is a rod-shaped bacterium characterized by its single replicon. This taxonomic classification suggests a relatively simple genomic structure, which can influence its adaptability and reproduction. The organism has been cataloged under the accession number PNFU00000000.1, indicating that it has been sequenced and classified within a specific database. Microbacterium species are known for their diverse ecological roles, often found in various environments, including soil, water, and plant surfaces. They can play significant roles in nutrient cycling and may contribute to the degradation of organic materials. The rod shape of Microbacterium sp. UMB0228 is typical for many bacteria, which can affect its motility and interaction with its environment. The presence of a single replicon suggests that this strain may have streamlined its genomic processes, potentially allowing for efficient replication and maintenance of essential functions. This trait, along with its ecological versatility, could imply that Microbacterium sp. UMB0228 is well-adapted to its niche, possibly influencing soil health or contributing to microbial communities in its habitat. Overall, the characteristics of Microbacterium sp. UMB0228 highlight its potential ecological significance, particularly in biogeochemical processes where microbial activity is key to maintaining environmental balance. Further research could elucidate its specific roles and interactions within its ecosystem.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusMicrobacterium
SpeciesMicrobacterium sp. UMB0228
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Microbacterium sp. UMB0228 ERR1203639.17957_1_51.24, whole genome

Gene Summary

Adenine Count

541095 bp

Thymine Count

542025 bp

Guanine Count

1280515 bp

Cytosine Count

1269515 bp

Genome Length

3640443 bp

Protein-coding Genes

3390 genes

Non-Coding Genes

94 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional rnase h/acid phosphataseCJ226_16720Not AvailableNegative3432789 - 343339122157.4
nadp(h)-dependent aldo-keto reductaseCJ226_16725Not AvailableNegative3433465 - 343449336557.6
polyribonucleotide nucleotidyltransferaseCJ226_16730Not AvailableNegative3434708 - 343698180439.6
udp-glucose 6-dehydrogenaseCJ226_16735Not AvailablePositive3437340 - 343865045679.6
glycosyl transferaseCJ226_16740Not AvailableNegative3438664 - 344060470137.2
deda family proteinCJ226_16745Not AvailablePositive3440799 - 344132918252.8
hypothetical proteinCJ226_16750Not AvailablePositive3441369 - 34415486587.56
c4-dicarboxylate transporter dctaCJ226_16755Not AvailableNegative3441603 - 344304250716.2
atpaseCJ226_16760Not AvailablePositive3443188 - 344447445167.0
two-component system response regulatorCJ226_16765Not AvailablePositive3444471 - 344516025278.4

Displaying genes 3291 – 3300 of 3484 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00037234-(gamma-L-glutamylamino)butanoateC9H15N2O5Chemical structure of 4-(gamma-L-glutamylamino)butanoateNot available
Average231.229Da
Monoisotopic231.0986452Da
BASm00041244-(gamma-L-glutamylamino)butanalC9H16N2O4Chemical structure of 4-(gamma-L-glutamylamino)butanalNot available
Average216.2343Da
Monoisotopic216.11100701Da

Displaying 1–4 of 4 metabolites

Health Effects

No health effects information available for this bacterium.