Nitrospiraceae bacterium

Kingdom

Pseudomonadati

Phylum

Nitrospirota

Class

Nitrospiria

Order

Nitrospirales

Family

Nitrospiraceae

Genus

Description

The Nitrospiraceae bacterium is characterized by having two replicons, indicating its genetic structure is organized into two distinct DNA molecules. This trait is significant for understanding its replication and genetic diversity. The bacterium is cataloged under two accessions: DMLV00000000.1 and QZKO00000000.1, which are identifiers used to reference its genomic data in biological databases. As a member of the Nitrospiraceae family, this bacterium is likely involved in critical biogeochemical processes, particularly in the nitrogen cycle. Members of this family are known for their roles in nitrite oxidation, which is a key step in the conversion of ammonia to nitrate in various environments, including aquatic ecosystems and soil. This functional trait underscores the ecological importance of Nitrospiraceae in maintaining nitrogen availability for various organisms. While specific ecological interactions or environmental conditions associated with the Nitrospiraceae bacterium were not provided, its role in nitrogen cycling suggests it could contribute to nutrient dynamics in its habitat. The presence of two replicons may also allow for genetic adaptability, potentially enhancing its survival in varying environmental conditions. Therefore, the Nitrospiraceae bacterium holds significance in both microbial ecology and biogeochemical cycling, positioning it as a critical player in ecosystem functioning.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Nitrospiraceae bacterium isolate SURF_11 Ga0104751_1001807,

Gene Summary

Adenine Count

691012 bp

Thymine Count

682883 bp

Guanine Count

633838 bp

Cytosine Count

633342 bp

Genome Length

2641075 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
carbon monoxide dehydrogenaseDCP24_12910Not AvailablePositive2424033 - 242481528077.2
5-formyltetrahydrofolate cyclo-ligaseDCP24_12915Not AvailablePositive2424825 - 242540321748.5
gtp cyclohydrolase i foleDCP24_12920Not AvailablePositive2425476 - 242602720461.2
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolaseDCP24_12925Not AvailablePositive2426044 - 242695232045.3
5,10-methylenetetrahydrofolate reductaseDCP24_12930Not AvailablePositive2427005 - 242768224820.3
5,10-methylenetetrahydrofolate reductaseDCP24_12935Not AvailablePositive2427679 - 242856032181.7
pilus assembly protein pilcDCP24_12940Not AvailablePositive2428570 - 242976642836.6
fis family transcriptional regulatorDCP24_12945Not AvailableNegative2429776 - 243111050485.5
hypothetical proteinDCP24_12950Not AvailableNegative2431123 - 243227143077.9
toxin-antitoxin system toxin subunitDCP24_12955Not AvailablePositive2432471 - 243299220105.6

Displaying genes 5081 – 5090 of 5139 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

111 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000738D-lyxoseC5H10O5Chemical structure of D-lyxose1114-34-7
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da

Displaying 1–10 of 111 metabolites

Health Effects

No health effects information available for this bacterium.