Larkinella rosea str. KCTC52004

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Larkinella

Description

Larkinella rosea strain KCTC52004 is a notable bacterium characterized by its single replicon, indicating a streamlined genetic architecture that may contribute to its adaptability and survival in various environments. The complete genome of this strain is cataloged under the accession number RQJO00000000.1, which provides a valuable resource for further genomic studies and phylogenetic analyses. Larkinella rosea is part of the broader Larkinella genus, which is recognized for its diverse ecological roles, often found in soil and aquatic environments. The single-replicon structure may allow for efficient replication and gene expression, potentially enhancing the organism's metabolic capabilities. This trait is particularly relevant for understanding the organism's function within microbial communities and its interactions with other microorganisms. The ecological implications of Larkinella rosea str. KCTC52004 can be significant, especially considering the role of bacteria in nutrient cycling and ecosystem health. By studying this strain, researchers may gain insights into its potential applications in bioremediation or agriculture, where its metabolic traits could be harnessed to improve soil quality or degrade pollutants. Overall, Larkinella rosea str. KCTC52004 represents an intriguing subject for microbiological research, especially in the context of ecological interactions and biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusLarkinella
SpeciesLarkinella rosea
StrainKCTC52004

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Larkinella rosea strain KCTC52004

Gene Summary

Adenine Count

2006507 bp

Thymine Count

2010626 bp

Guanine Count

2097385 bp

Cytosine Count

2061540 bp

Genome Length

8177225 bp

Protein-coding Genes

6388 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
30s ribosomal protein s16EHT25_02020Not AvailablePositive462803 - 46334519498.1
16s rrna processing protein rimmEHT25_02025Not AvailablePositive463556 - 46414622156.3
trna (guanosine(37)-n1)-methyltransferase trmdEHT25_02030Not AvailablePositive464136 - 46481025308.3
penicillin-binding proteinEHT25_02035Not AvailableNegative464907 - 46709681963.6
gnat family n-acetyltransferaseEHT25_02040Not AvailableNegative467162 - 46761117341.7
rlua family pseudouridine synthaseEHT25_02045Not AvailableNegative467778 - 46883639975.4
hypothetical proteinEHT25_02050Not AvailablePositive469080 - 46941212169.4
1-aminocyclopropane-1-carboxylate deaminase/d-cysteine desulfhydraseEHT25_02055Not AvailablePositive469416 - 47030333065.5
formyl transferaseEHT25_02060Not AvailablePositive470364 - 47112828731.2
duf3473 domain-containing proteinEHT25_02065Not AvailablePositive471132 - 47199233600.0

Displaying genes 401 – 410 of 6440 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.