Larkinella rosea str. KCTC52004

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Larkinella

Description

Larkinella rosea strain KCTC52004 is a notable bacterium characterized by its single replicon, indicating a streamlined genetic architecture that may contribute to its adaptability and survival in various environments. The complete genome of this strain is cataloged under the accession number RQJO00000000.1, which provides a valuable resource for further genomic studies and phylogenetic analyses. Larkinella rosea is part of the broader Larkinella genus, which is recognized for its diverse ecological roles, often found in soil and aquatic environments. The single-replicon structure may allow for efficient replication and gene expression, potentially enhancing the organism's metabolic capabilities. This trait is particularly relevant for understanding the organism's function within microbial communities and its interactions with other microorganisms. The ecological implications of Larkinella rosea str. KCTC52004 can be significant, especially considering the role of bacteria in nutrient cycling and ecosystem health. By studying this strain, researchers may gain insights into its potential applications in bioremediation or agriculture, where its metabolic traits could be harnessed to improve soil quality or degrade pollutants. Overall, Larkinella rosea str. KCTC52004 represents an intriguing subject for microbiological research, especially in the context of ecological interactions and biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusLarkinella
SpeciesLarkinella rosea
StrainKCTC52004

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Larkinella rosea strain KCTC52004

Gene Summary

Adenine Count

2006507 bp

Thymine Count

2010626 bp

Guanine Count

2097385 bp

Cytosine Count

2061540 bp

Genome Length

8177225 bp

Protein-coding Genes

6388 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sigma-54-dependent fis family transcriptional regulatorEHT25_01040Not AvailableNegative221629 - 22293048730.2
trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miabEHT25_01045Not AvailableNegative222953 - 22437753880.4
outer membrane protein assembly factorEHT25_01050Not AvailableNegative224593 - 227235100645.0
rna methyltransferaseEHT25_01055Not AvailablePositive227255 - 22801928256.9
hypothetical proteinEHT25_01060Not AvailablePositive228200 - 231430121781.0
dna-binding response regulatorEHT25_01065Not AvailablePositive231554 - 23220424288.7
susc/raga family tonb-linked outer membrane proteinEHT25_01070Not AvailablePositive232493 - 235693116071.0
susd/ragb family nutrient-binding outer membrane lipoproteinEHT25_01075Not AvailablePositive235717 - 23725856101.3
hypothetical proteinEHT25_01080Not AvailablePositive237490 - 23793316646.3
nuclear transport factor 2 family proteinEHT25_01085Not AvailableNegative238051 - 23892331907.4

Displaying genes 211 – 220 of 6440 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.