Larkinella knui str. KCTC42998

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Larkinella

Description

Larkinella knui strain KCTC42998 is a bacterial species characterized by a single replicon. The genomic data for this strain is accessible under the accession number RQJP00000000.1. This information indicates that Larkinella knui has a streamlined genomic structure, which may contribute to its adaptability in various environments. As a member of the Larkinella genus, Larkinella knui is part of a group of bacteria known for their diverse ecological roles. The presence of a single replicon in its genome suggests a relatively simple replication mechanism, which can be advantageous for rapid growth and adaptation to changing environmental conditions. Additionally, the characteristics of the Larkinella genus often include involvement in biogeochemical cycles, although specific ecological roles of Larkinella knui strain KCTC42998 are not detailed in the provided information. Understanding the genomic structure and traits of Larkinella knui could provide insights into its ecological functions and potential applications in biotechnology or environmental management. The single replicon may allow for efficient gene regulation and expression, making it a subject of interest for studies on microbial adaptation and resilience. Further research may reveal more about the ecological impacts and biotechnological potential of this strain in its natural habitats.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusLarkinella
SpeciesLarkinella knui
StrainKCTC42998

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Larkinella knui strain KCTC42998

Gene Summary

Adenine Count

1854750 bp

Thymine Count

1865285 bp

Guanine Count

1965966 bp

Cytosine Count

1966621 bp

Genome Length

7653530 bp

Protein-coding Genes

6118 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sam-dependent methyltransferaseEHT87_29395Not AvailableNegative7204544 - 720599254254.5
hypothetical proteinEHT87_29400Not AvailablePositive7206288 - 720741541393.6
histidinol-phosphataseEHT87_29405Not AvailableNegative7207526 - 720945473553.5
cold-shock proteinEHT87_29410Not AvailableNegative7209679 - 72098707045.34
alpha-glucosidaseEHT87_29415Not AvailableNegative7209976 - 721183870249.5
ragb/susd family nutrient uptake outer membrane proteinEHT87_29420Not AvailableNegative7211930 - 721359762289.1
susc/raga family tonb-linked outer membrane proteinEHT87_29425Not AvailableNegative7213632 - 7216907121562.0
hypothetical proteinEHT87_29430Not AvailablePositive7216985 - 72171827250.62
duf4974 domain-containing proteinEHT87_29435Not AvailableNegative7217236 - 721836042130.2
sigma-70 family rna polymerase sigma factorEHT87_29440Not AvailablePositive7218591 - 721921424572.4

Displaying genes 5821 – 5830 of 6167 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.