Larkinella knui str. KCTC42998

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Larkinella

Description

Larkinella knui strain KCTC42998 is a bacterial species characterized by a single replicon. The genomic data for this strain is accessible under the accession number RQJP00000000.1. This information indicates that Larkinella knui has a streamlined genomic structure, which may contribute to its adaptability in various environments. As a member of the Larkinella genus, Larkinella knui is part of a group of bacteria known for their diverse ecological roles. The presence of a single replicon in its genome suggests a relatively simple replication mechanism, which can be advantageous for rapid growth and adaptation to changing environmental conditions. Additionally, the characteristics of the Larkinella genus often include involvement in biogeochemical cycles, although specific ecological roles of Larkinella knui strain KCTC42998 are not detailed in the provided information. Understanding the genomic structure and traits of Larkinella knui could provide insights into its ecological functions and potential applications in biotechnology or environmental management. The single replicon may allow for efficient gene regulation and expression, making it a subject of interest for studies on microbial adaptation and resilience. Further research may reveal more about the ecological impacts and biotechnological potential of this strain in its natural habitats.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusLarkinella
SpeciesLarkinella knui
StrainKCTC42998

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Larkinella knui strain KCTC42998

Gene Summary

Adenine Count

1854750 bp

Thymine Count

1865285 bp

Guanine Count

1965966 bp

Cytosine Count

1966621 bp

Genome Length

7653530 bp

Protein-coding Genes

6118 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sigma-70 family rna polymerase sigma factorEHT87_29345Not AvailablePositive7186108 - 718666221088.5
hypothetical proteinEHT87_29350Not AvailablePositive7186760 - 718745527252.2
chat domain-containing proteinEHT87_29355Not AvailableNegative7187452 - 7190238104414.0
chat domain-containing proteinEHT87_29360Not AvailablePositive7190304 - 7193921135437.0
hypothetical proteinEHT87_29365Not AvailablePositive7194023 - 719608975482.6
duf885 domain-containing proteinEHT87_29370Not AvailableNegative7196117 - 719784766940.2
glycoside hydrolase family 2EHT87_29375Not AvailablePositive7198159 - 719997368648.7
hypothetical proteinEHT87_29380Not AvailablePositive7200279 - 720141240725.7
restriction system-associated aaa family atpaseEHT87_29385Not AvailableNegative7201495 - 720299756814.7
type i restriction endonuclease subunit sEHT87_29390Not AvailableNegative7202994 - 720454757762.2

Displaying genes 5811 – 5820 of 6167 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.