Larkinella knui str. KCTC42998

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Larkinella

Description

Larkinella knui strain KCTC42998 is a bacterial species characterized by a single replicon. The genomic data for this strain is accessible under the accession number RQJP00000000.1. This information indicates that Larkinella knui has a streamlined genomic structure, which may contribute to its adaptability in various environments. As a member of the Larkinella genus, Larkinella knui is part of a group of bacteria known for their diverse ecological roles. The presence of a single replicon in its genome suggests a relatively simple replication mechanism, which can be advantageous for rapid growth and adaptation to changing environmental conditions. Additionally, the characteristics of the Larkinella genus often include involvement in biogeochemical cycles, although specific ecological roles of Larkinella knui strain KCTC42998 are not detailed in the provided information. Understanding the genomic structure and traits of Larkinella knui could provide insights into its ecological functions and potential applications in biotechnology or environmental management. The single replicon may allow for efficient gene regulation and expression, making it a subject of interest for studies on microbial adaptation and resilience. Further research may reveal more about the ecological impacts and biotechnological potential of this strain in its natural habitats.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusLarkinella
SpeciesLarkinella knui
StrainKCTC42998

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Larkinella knui strain KCTC42998

Gene Summary

Adenine Count

1854750 bp

Thymine Count

1865285 bp

Guanine Count

1965966 bp

Cytosine Count

1966621 bp

Genome Length

7653530 bp

Protein-coding Genes

6118 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pas domain s-box proteinEHT87_08190Not AvailableNegative2026598 - 202901892035.2
response regulatorEHT87_08195Not AvailableNegative2029030 - 202943115139.6
dihydroxy-acid dehydrataseEHT87_08200Not AvailablePositive2029604 - 203131061749.6
sugar phosphate isomerase/epimeraseEHT87_08205Not AvailableNegative2031420 - 203235533811.9
duf4126 domain-containing proteinEHT87_08210Not AvailablePositive2032646 - 203321519801.8
peptidase m19EHT87_08215Not AvailableNegative2033218 - 203430640211.6
membrane or secreted proteinEHT87_08220Not AvailableNegative2034362 - 203507826591.0
n-acetyltransferaseEHT87_08225Not AvailablePositive2035494 - 203580211853.2
porin family proteinEHT87_08230Not AvailablePositive2036251 - 203679318961.6
aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzymeEHT87_08235Not AvailablePositive2036922 - 203795337690.5

Displaying genes 1631 – 1640 of 6167 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.