SAR116 cluster bacterium

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Candidatus Puniceispirillales

Family

Genus

Description

The SAR116 cluster bacterium is a notable group of marine bacteria characterized by their distinct ecological role in oceanic environments. This cluster is particularly important due to its contribution to biogeochemical cycles, especially in nutrient cycling within marine ecosystems. The SAR116 cluster comprises seven replicons, indicating a complex genetic organization that may contribute to its adaptability and ecological functions. The genetic information of this bacterium is accessible through several sequence accessions, including NZIY00000000.1, NZPL00000000.1, NZUZ00000000.1, QOQH00000000.1, NZIT00000000.1, PBVP00000000.1, and NZFN00000000.1. These accessions provide valuable resources for researchers studying the genetics and physiology of SAR116. Ecologically, SAR116 bacteria are recognized for their role in the marine microbial community, where they help in the degradation of organic matter and the recycling of nutrients. Their presence in various oceanic regions underscores their significance in maintaining the health and stability of marine ecosystems. The unique traits of the SAR116 cluster bacterium illustrate its importance as a keystone species in ocean biogeochemistry, highlighting the interconnectedness of microbial life and nutrient dynamics in the marine environment.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: SAR116 cluster bacterium isolate MED595 142005, whole genome

Gene Summary

Adenine Count

556131 bp

Thymine Count

555944 bp

Guanine Count

503576 bp

Cytosine Count

506236 bp

Genome Length

2124773 bp

Protein-coding Genes

2061 genes

Non-Coding Genes

27 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyaseDBW67_00920Not AvailablePositive181317 - 18216231471.1
30s ribosomal protein s20DBW67_00925Not AvailablePositive182303 - 18256910031.4
chromosomal replication initiator protein dnaaDBW67_00930Not AvailablePositive182867 - 18425553129.0
dna polymerase iii subunit betaDBW67_00935Not AvailablePositive184337 - 18545841422.4
dna replication/repair protein recfDBW67_00940Not AvailablePositive185460 - 18657840708.7
dna topoisomerase (atp-hydrolyzing) subunit bDBW67_00945Not AvailablePositive186640 - 18903088269.0
indolepyruvate ferredoxin oxidoreductase family proteinDBW67_00950Not AvailableNegative189031 - 192450124333.0
hypothetical proteinDBW67_00955Not AvailablePositive192593 - 1927786830.74
lyse family translocatorDBW67_00960Not AvailablePositive192757 - 19336821905.9
pbp1a family penicillin-binding proteinDBW67_00965Not AvailablePositive193305 - 19541376523.4

Displaying genes 7161 – 7170 of 12573 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.