Methylophaga sp.

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Thiotrichales

Family

Piscirickettsiaceae

Genus

Methylophaga

Description

Methylophaga sp. is a rod-shaped bacterium known for its presence in fresh water and open Atlantic waters. This organism is characterized by the presence of true flagella, which are likely utilized for motility in its aquatic environment. Genetically, Methylophaga sp. is notable for having four replicons, which suggests a complex genomic architecture that may contribute to its adaptability and functionality in various aquatic habitats. The organism is represented in several genetic databases, with accessions including NZSL00000000.1, PAJP00000000.1, NVVW00000000.1, and NVXT00000000.2, indicating its documented presence in scientific research. The habitat of Methylophaga sp. in fresh and open Atlantic waters suggests a role in the aquatic ecosystem, potentially involved in the cycling of organic compounds or the degradation of methanol, as its genus name implies a methylotrophic lifestyle. This ecological insight indicates that Methylophaga sp. may play a significant role in nutrient cycling and energy flow within freshwater and marine environments, contributing to the overall health and balance of these ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderThiotrichales
FamilyPiscirickettsiaceae
GenusMethylophaga
SpeciesMethylophaga sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatFresh water; open Atlantic waters
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

PAJP00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3345 genes

Non-Coding Genes

262 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
suf system fe-s cluster assembly regulatorCMH17_13210Not AvailablePositive2724811 - 272529917714.2
fe-s cluster assembly protein sufbCMH17_13215Not AvailablePositive2725292 - 272674053745.4
fe-s cluster assembly atpase sufcCMH17_13220Not AvailablePositive2726822 - 272758928336.1
fe-s cluster assembly protein sufdCMH17_13225Not AvailablePositive2727586 - 272889048810.6
cysteine desulfurase csdaCMH17_13230Not AvailablePositive2728883 - 273010644786.7
suf system nifu family fe-s cluster assembly proteinCMH17_13235Not AvailablePositive2730103 - 273055216571.8
suf system fe-s cluster assembly proteinCMH17_13240Not AvailablePositive2730556 - 273089112409.8
hypothetical proteinCMH17_13245Not AvailablePositive2731349 - 27315708266.03
sensor histidine kinaseCMH17_13250Not AvailablePositive2731829 - 273315750248.3
dna-binding response regulatorCMH17_13255Not AvailablePositive2733150 - 273380624211.2

Displaying genes 8061 – 8070 of 8606 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

48 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00015534-hydroxy-6-methylpretetramideC20H15NO7Chemical structure of 4-hydroxy-6-methylpretetramideNot available
Average381.34Da
Monoisotopic381.0848518Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001785(2R,3R)-tartrateC4H6O6Chemical structure of (2R,3R)-tartrate87-69-4
Average150.0868Da
Monoisotopic150.0164379Da
BASm0001787(2R,3S)-tartrateC4H4O6Chemical structure of (2R,3S)-tartrateNot available
Average148.071Da
Monoisotopic148.001885Da

Displaying 1–10 of 48 metabolites

Health Effects

No health effects information available for this bacterium.