Rhodoferax sp. TH121

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Rhodoferax

Description

Rhodoferax sp. TH121 is a Gram-negative bacterium characterized by its rod-shaped morphology and the presence of flagella. This motility feature suggests that Rhodoferax sp. TH121 is capable of movement, which may play a role in its ecological interactions and habitat colonization. The organism is notable for having a single replicon, indicating a streamlined genetic architecture that may influence its growth and replication processes. The accession number for Rhodoferax sp. TH121 is NOXW00000000.1, which provides a reference for genetic and genomic studies related to this bacterium. In terms of ecological significance, the traits of Rhodoferax sp. TH121, particularly its Gram-negative nature and motility, suggest potential roles in biogeochemical cycles, possibly in environments where organic matter decomposition and nutrient cycling occur. Gram-negative bacteria are often involved in various environmental processes such as nitrogen fixation, carbon cycling, and the degradation of complex organic compounds. Thus, Rhodoferax sp. TH121 may contribute to these vital ecological functions, although further research would be needed to elucidate its specific roles in its native environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusRhodoferax
SpeciesRhodoferax sp. TH121
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhodoferax sp. TH121
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodoferax sp. TH121 scaffold3, whole genome shotgun sequence.

Gene Summary

Adenine Count

748122 bp

Thymine Count

792066 bp

Guanine Count

1254543 bp

Cytosine Count

1194325 bp

Genome Length

3989058 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter substrate-binding proteinCHU94_16060Not AvailableNegative3387364 - 338836234286.4
lysr family transcriptional regulatorCHU94_16065Not AvailableNegative3388473 - 338939033525.1
molybdenum abc transporter substrate-binding proteinCHU94_16070Not AvailablePositive3389566 - 339022221944.4
4-oxalomesaconate hydrataseCHU94_16075Not AvailablePositive3390271 - 339129938357.8
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylaseCHU94_16080Not AvailablePositive3391596 - 339227923834.1
2-pyrone-4,6-dicarboxylate hydrolaseCHU94_16085Not AvailablePositive3392289 - 339322735213.0
protocatechuate 4,5-dioxygenase subunit alphaCHU94_16090Not AvailablePositive3393229 - 339367816873.1
protocatechuate 3,4-dioxygenaseCHU94_16095Not AvailablePositive3393684 - 339457732566.8
oxidoreductaseCHU94_16100Not AvailablePositive3394577 - 339553935106.0
hypothetical proteinCHU94_16105Not AvailablePositive3395608 - 339605716105.2

Displaying genes 3201 – 3210 of 3773 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.