Rhodoferax sp. TH121

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Rhodoferax

Description

Rhodoferax sp. TH121 is a Gram-negative bacterium characterized by its rod-shaped morphology and the presence of flagella. This motility feature suggests that Rhodoferax sp. TH121 is capable of movement, which may play a role in its ecological interactions and habitat colonization. The organism is notable for having a single replicon, indicating a streamlined genetic architecture that may influence its growth and replication processes. The accession number for Rhodoferax sp. TH121 is NOXW00000000.1, which provides a reference for genetic and genomic studies related to this bacterium. In terms of ecological significance, the traits of Rhodoferax sp. TH121, particularly its Gram-negative nature and motility, suggest potential roles in biogeochemical cycles, possibly in environments where organic matter decomposition and nutrient cycling occur. Gram-negative bacteria are often involved in various environmental processes such as nitrogen fixation, carbon cycling, and the degradation of complex organic compounds. Thus, Rhodoferax sp. TH121 may contribute to these vital ecological functions, although further research would be needed to elucidate its specific roles in its native environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusRhodoferax
SpeciesRhodoferax sp. TH121
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhodoferax sp. TH121
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodoferax sp. TH121 scaffold3, whole genome shotgun sequence.

Gene Summary

Adenine Count

748122 bp

Thymine Count

792066 bp

Guanine Count

1254543 bp

Cytosine Count

1194325 bp

Genome Length

3989058 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dipeptide abc transporter atp-binding protein dppdCHU94_10390Not AvailableNegative2178393 - 217946638325.5
peptide abc transporter permeaseCHU94_10395Not AvailableNegative2179463 - 218032030831.9
peptide abc transporterCHU94_10400Not AvailableNegative2180317 - 218126733642.3
peptide abc transporterCHU94_10405Not AvailableNegative2181275 - 218287958213.7
hypothetical proteinCHU94_10410Not AvailablePositive2182997 - 218338614088.8
2-dehydro-3-deoxygluconokinaseCHU94_10415Not AvailablePositive2183390 - 218431632420.5
alpha/beta hydrolaseCHU94_10420Not AvailablePositive2184346 - 218524531530.7
nadph-dependent 7-cyano-7-deazaguanine reductase quefCHU94_10425Not AvailablePositive2185242 - 218608731472.4
diguanylate cyclaseCHU94_10430Not AvailableNegative2186133 - 218878496843.3
abc transporter substrate-binding proteinCHU94_10435Not AvailableNegative2188784 - 218986339012.2

Displaying genes 2071 – 2080 of 3773 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.