Variovorax sp. B4

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. B4 is a rod-shaped bacterium characterized by a single replicon, indicating a streamlined genomic structure. The genome of Variovorax sp. B4 is accessible under the accession number NNBQ00000000.1, which provides essential information for researchers interested in its genetic makeup and potential applications. The rod shape of Variovorax sp. B4 suggests a specific adaptation to its environment, which may enhance its motility and nutrient uptake. This morphological characteristic is often associated with various ecological roles, including decomposition and bioremediation. Rod-shaped bacteria are typically efficient in colonizing surfaces and can thrive in diverse habitats, indicating that Variovorax sp. B4 may play a significant role in its ecosystem. In terms of ecological insight, the presence of Variovorax sp. B4 within a microbial community could suggest its involvement in nutrient cycling, particularly in environments impacted by organic waste. Its capacity to adapt to varying conditions might facilitate interactions with other microorganisms, contributing to overall microbial diversity and resilience. Understanding the specific functions of Variovorax sp. B4 in its habitat could provide valuable information for applications in environmental microbiology and biotechnology, particularly in efforts to improve soil health or bioremediation strategies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. B4
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. B4 CHC07_16, whole genome shotgun sequence.

Gene Summary

Adenine Count

1401375 bp

Thymine Count

1403305 bp

Guanine Count

2776349 bp

Cytosine Count

2764437 bp

Genome Length

8345466 bp

Protein-coding Genes

7991 genes

Non-Coding Genes

176 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
4,5-dihydroxyphthalate decarboxylaseCHC07_06121Not AvailableNegative6263991 - 626498036682.7
phthalate 4,5-dioxygenase oxygenase subunitCHC07_06122Not AvailableNegative6264989 - 626630848740.8
3-phenylpropionate/cinnamic acid dioxygenase subunit alphaCHC07_06123Not AvailablePositive6266701 - 626795147732.4
hypothetical proteinCHC07_06124Not AvailablePositive6267951 - 626837315986.8
hypothetical proteinCHC07_06125Not AvailablePositive6268437 - 626888016117.4
hypothetical proteinCHC07_06126Not AvailablePositive6268940 - 626929613004.4
n-formylmaleamate deformylaseCHC07_06127Not AvailablePositive6269293 - 627014430985.9
2,5-dihydroxypyridine 5,6-dioxygenaseCHC07_06128Not AvailablePositive6270135 - 627117537861.2
maleamate amidohydrolaseCHC07_06129Not AvailablePositive6271175 - 627178621550.0
transcriptional activator nphrCHC07_06130Not AvailablePositive6271844 - 627281236350.0

Displaying genes 6121 – 6130 of 8167 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.