Variovorax sp. B4

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. B4 is a rod-shaped bacterium characterized by a single replicon, indicating a streamlined genomic structure. The genome of Variovorax sp. B4 is accessible under the accession number NNBQ00000000.1, which provides essential information for researchers interested in its genetic makeup and potential applications. The rod shape of Variovorax sp. B4 suggests a specific adaptation to its environment, which may enhance its motility and nutrient uptake. This morphological characteristic is often associated with various ecological roles, including decomposition and bioremediation. Rod-shaped bacteria are typically efficient in colonizing surfaces and can thrive in diverse habitats, indicating that Variovorax sp. B4 may play a significant role in its ecosystem. In terms of ecological insight, the presence of Variovorax sp. B4 within a microbial community could suggest its involvement in nutrient cycling, particularly in environments impacted by organic waste. Its capacity to adapt to varying conditions might facilitate interactions with other microorganisms, contributing to overall microbial diversity and resilience. Understanding the specific functions of Variovorax sp. B4 in its habitat could provide valuable information for applications in environmental microbiology and biotechnology, particularly in efforts to improve soil health or bioremediation strategies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. B4
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. B4 CHC07_16, whole genome shotgun sequence.

Gene Summary

Adenine Count

1401375 bp

Thymine Count

1403305 bp

Guanine Count

2776349 bp

Cytosine Count

2764437 bp

Genome Length

8345466 bp

Protein-coding Genes

7991 genes

Non-Coding Genes

176 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ditp/xtp pyrophosphataseCHC07_03337Not AvailableNegative3450463 - 345106221256.7
ribonuclease phCHC07_03338Not AvailableNegative3451093 - 345182125565.6
serine/threonine phosphatase stpCHC07_03339Not AvailableNegative3451847 - 345276132778.0
serine/threonine-protein kinase pk-1CHC07_03340Not AvailableNegative3452799 - 345380637715.8
hypothetical proteinCHC07_03341Not AvailablePositive3453899 - 345481333218.0
guanylate kinaseCHC07_03342Not AvailablePositive3454840 - 345546023173.6
dna-directed rna polymerase subunit omegaCHC07_03343Not AvailablePositive3455498 - 34557017426.28
bifunctional (p)ppgpp synthase/hydrolase spotCHC07_03344Not AvailablePositive3455795 - 345805083009.5
transcription elongation factor grebCHC07_03345Not AvailableNegative3458054 - 345862620925.7
Trna-argNot AvailableNot AvailablePositive3458684 - 3458760Not Available

Displaying genes 3381 – 3390 of 8167 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.