Shewanella bicestrii str. JAB-1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella bicestrii str. JAB-1 is a species of bacteria that possesses several notable characteristics. A key feature of this strain is the presence of flagella, which are important for motility and can aid in navigating various environments. Additionally, S. bicestrii str. JAB-1 has a unique genomic structure, consisting of three replicons. This multi-replicon arrangement can offer advantages in terms of genetic adaptability and stability, allowing the organism to thrive in diverse conditions. The strain has been cataloged with specific genomic accessions: NZ_CP022360.1, NZ_CP022358.1, and NZ_CP022359.1. These accessions indicate the availability of its complete genomic sequences, which can be utilized for further research and analysis of its genetic makeup and functional capabilities. The ecological insight into Shewanella bicestrii str. JAB-1 lies in its potential roles within its environment. The presence of flagella suggests that this bacterium is likely motile and can explore various niches, which may include marine sediments or other aquatic environments. Its ability to thrive in such habitats could be linked to its metabolic versatility, making it an important player in biogeochemical cycles, such as those involving carbon and nitrogen. Understanding the traits of S. bicestrii str. JAB-1 could enhance our knowledge of microbial ecology and the functional roles of bacteria in ecosystem processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella bicestrii
StrainJAB-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shewanella bicestrii strain JAB-1 plasmid pSHE-2, complete

Gene Summary

Adenine Count

3287 bp

Thymine Count

2915 bp

Guanine Count

2035 bp

Cytosine Count

2242 bp

Genome Length

10479 bp

Protein-coding Genes

15 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sigma-54-dependent transcriptional regulatorCF168_RS13785Not AvailablePositive3170622 - 317200151540.3
transglycosylase domain-containing proteinCF168_RS13790Not AvailableNegative3172126 - 3175197117357.0
thymidine kinaseCF168_RS13795Not AvailableNegative3175485 - 317606321855.1
multiheme c-type cytochromeCF168_RS13800Not AvailablePositive3176602 - 317870773645.7
m3 family metallopeptidaseCF168_RS13805Not AvailablePositive3178879 - 318102979512.3
na+/h+ antiporter nhac family proteinCF168_RS13810Not AvailableNegative3181145 - 318271355668.2
electron transfer flavoprotein subunit alpha/fixb family proteinCF168_RS13815Not AvailableNegative3183085 - 318401131366.6
electron transfer flavoprotein subunit beta/fixa family proteinCF168_RS13820Not AvailableNegative3184012 - 318476126772.8
h-ns family nucleoid-associated regulatory proteinCF168_RS13825Not AvailablePositive3185072 - 318546414538.6
amidohydrolase family proteinCF168_RS13830Not AvailablePositive3185664 - 3188738113143.0

Displaying genes 2981 – 2990 of 4407 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.