Sphingobium sp. D43FB

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. D43FB is characterized by the presence of flagella, which suggests that this bacterium is motile. It possesses a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The genomic information for Sphingobium sp. D43FB is cataloged under the accession number NMUA00000000.1. The presence of flagella not only facilitates movement but may also play a significant role in the bacterium's ability to colonize different ecological niches, potentially enhancing its survival in competitive microbial communities. Sphingobium species are known for their capability to degrade environmental pollutants, which may imply that D43FB could be involved in bioremediation processes. The single replicon feature suggests an efficient genomic organization, likely aiding in the rapid adaptation to environmental changes or stressors. Overall, the motility and genomic characteristics of Sphingobium sp. D43FB could provide insights into its ecological roles, particularly in pollutant degradation and its ability to thrive in diverse habitats. The study of such traits in Sphingobium sp. D43FB can contribute to our understanding of microbial dynamics in ecosystems impacted by anthropogenic activities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. D43FB
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. D43FB NODE_333_length_223_cov_24.0208, whole

Gene Summary

Adenine Count

943085 bp

Thymine Count

939278 bp

Guanine Count

1566142 bp

Cytosine Count

1570210 bp

Genome Length

5018715 bp

Protein-coding Genes

4586 genes

Non-Coding Genes

81 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uroporphyrinogen-iii c-methyltransferaseSxD43FB_15985Not AvailablePositive3391030 - 339175224795.9
precorrin-6a synthase (deacetylating)SxD43FB_15990Not AvailablePositive3391749 - 339251327623.6
cob(i)yrinic acid a,c-diamide adenosyltransferaseSxD43FB_15995Not AvailablePositive3392503 - 339312922911.8
5,6-dimethylbenzimidazole synthaseSxD43FB_16000Not AvailablePositive3393162 - 339379123558.1
duf1636 domain-containing proteinSxD43FB_16005Not AvailablePositive3393817 - 339422414566.3
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferaseSxD43FB_16010Not AvailablePositive3394221 - 339523733723.9
histidine phosphatase family proteinSxD43FB_16015Not AvailablePositive3395234 - 339581520249.0
adenosylcobinamide-gdp ribazoletransferaseSxD43FB_16020Not AvailablePositive3395812 - 339654025433.7
threonine-phosphate decarboxylaseSxD43FB_16025Not AvailablePositive3396537 - 339752035047.8
cobyric acid synthase cobqSxD43FB_16035Not AvailablePositive3398450 - 339993751662.6

Displaying genes 3161 – 3170 of 4667 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.