Herbaspirillum robiniae str. HZ10

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Herbaspirillum

Description

Herbaspirillum robiniae str. HZ10 is a Gram-negative bacterium characterized by the presence of flagella, which suggest motility and potential environmental adaptability. This strain has a single replicon, indicating a streamlined genomic structure that may contribute to its efficiency in various ecological niches. The genomic data for this strain is accessible under the accession number NJGU00000000.1. As a member of the genus Herbaspirillum, this bacterium is likely involved in plant-associated interactions, which may include promoting plant growth or influencing soil nutrient dynamics. Given its motility, H. robiniae str. HZ10 may effectively colonize plant roots or other substrates, enhancing its role in the rhizosphere. Such interactions are crucial for nutrient cycling and can have significant implications for plant health and agricultural productivity. Overall, the traits of Herbaspirillum robiniae str. HZ10 highlight its potential ecological role, particularly in promoting beneficial plant-microbe interactions. Understanding the behavior and characteristics of this strain could provide insights into its applications in sustainable agriculture and environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusHerbaspirillum
SpeciesHerbaspirillum robiniae
StrainHZ10

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Herbaspirillum robiniae str. HZ10
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Herbaspirillum robiniae strain HZ10 Scaffold26_1, whole genome

Gene Summary

Adenine Count

974280 bp

Thymine Count

970561 bp

Guanine Count

1786735 bp

Cytosine Count

1802980 bp

Genome Length

5534556 bp

Protein-coding Genes

4786 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tonb-dependent siderophore receptorCEJ42_12200Not AvailableNegative2786479 - 278898390084.9
rna polymerase subunit sigmaCEJ42_12210Not AvailableNegative2790110 - 279062219161.1
lysr family transcriptional regulatorCEJ42_12215Not AvailablePositive2790832 - 279175232860.1
lysr family transcriptional regulatorCEJ42_12220Not AvailableNegative2791768 - 279268233963.4
d-hexose-6-phosphate mutarotaseCEJ42_12225Not AvailablePositive2792852 - 279379635116.8
tartrate dehydrogenaseCEJ42_12230Not AvailablePositive2794000 - 279507939725.6
c4-dicarboxylate abc transporterCEJ42_12235Not AvailablePositive2795281 - 279629737716.6
hcp1 family type vi secretion system effectorCEJ42_12240Not AvailablePositive2796473 - 279696118252.9
hypothetical proteinCEJ42_12245Not AvailablePositive2797064 - 27972496908.61
hypothetical proteinCEJ42_12250Not AvailablePositive2797286 - 279772915891.0

Displaying genes 2431 – 2440 of 4844 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.